package fails when installing with poetry on macos #8
Description
Hi,
There seems to be some dependency issues, when installing the package with poetry, which I'm guessing is related to recent changes to numpy. Calling from spatstat_interface.interface import SpatstatInterface I get:
% python
Python 3.12.4 | packaged by Anaconda, Inc. | (main, Jun 18 2024, 10:07:17) [Clang 14.0.6 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from spatstat_interface.interface import SpatstatInterface
During startup - Warning messages:
1: Setting LC_COLLATE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/spatstat_interface/interface.py", line 3, in <module>
from spatstat_interface.utils import install_r_package
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/spatstat_interface/utils.py", line 3, in <module>
from rpy2.robjects import pandas2ri
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/rpy2/robjects/pandas2ri.py", line 16, in <module>
import pandas # type: ignore
^^^^^^^^^^^^^
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/__init__.py", line 22, in <module>
from pandas.compat import is_numpy_dev as _is_numpy_dev # pyright: ignore # noqa:F401
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/compat/__init__.py", line 18, in <module>
from pandas.compat.numpy import (
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/compat/numpy/__init__.py", line 4, in <module>
from pandas.util.version import Version
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/util/__init__.py", line 2, in <module>
from pandas.util._decorators import ( # noqa:F401
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/util/_decorators.py", line 14, in <module>
from pandas._libs.properties import cache_readonly
File "/Users/jrh630/anaconda3/envs/spatstat_interface/lib/python3.12/site-packages/pandas/_libs/__init__.py", line 13, in <module>
from pandas._libs.interval import Interval
File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval
ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
I installed the package by:
brew install pipx
pipx install poetry
poetry init
where I created a dummy project:
Generated file
[tool.poetry]
name = "spatstat-test"
version = "0.1.0"
description = ""
authors = ["Jon Sporring <[email protected]>"]
readme = "README.md"
[tool.poetry.dependencies]
python = "^3.12"
and then I installed spatstat-interface
poetry add spatstat-interface
which fetched the following:
Using version ^1.0.1 for spatstat-interface
Updating dependencies
Resolving dependencies... (1.6s)
Package operations: 12 installs, 0 updates, 0 removals
- Installing markupsafe (2.1.5)
- Installing pycparser (2.22)
- Installing six (1.16.0)
- Installing cffi (1.17.0)
- Installing jinja2 (3.1.4)
- Installing numpy (2.0.1)
- Installing python-dateutil (2.9.0.post0)
- Installing pytz (2024.1)
- Installing tzlocal (5.2)
- Installing pandas (1.5.3)
- Installing rpy2 (3.5.16)
- Installing spatstat-interface (1.0.1)
Best, Jon