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‎.gitignore‎

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Results/

‎BRCA1_example.json‎

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{
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"conditions": [
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{
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"name": "E3",
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"selections": [
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{
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"libraries": [
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_input_sample.fq.bz2",
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"reverse": 0
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},
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"name": "E3 Input",
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"report filtered reads": false,
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"timepoint": 0,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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},
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_rep1_rd2.fq.bz2",
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"reverse": 0
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},
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"name": "Rep1 Rd2",
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"report filtered reads": false,
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"timepoint": 2,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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},
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_rep1_rd5.fq.bz2",
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"reverse": 0
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},
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"name": "Rep1 Rd5",
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"report filtered reads": false,
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"timepoint": 5,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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}
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],
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"name": "Rep1"
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},
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{
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"libraries": [
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_input_sample.fq.bz2",
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"reverse": 0
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},
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"name": "E3 Input",
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"report filtered reads": false,
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"timepoint": 0,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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},
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_rep2_rd2.fq.bz2",
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"reverse": 0
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},
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"name": "Rep2 Rd2",
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"report filtered reads": false,
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"timepoint": 2,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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},
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{
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"barcodes": {
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"map file": "Data/BRCA1_example_barcodemap.txt.bz2"
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},
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"fastq": {
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"filters": {
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"min quality": 20
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},
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"length": 16,
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"reads": "Data/BRCA1_rep2_rd5.fq.bz2",
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"reverse": 0
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},
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"name": "Rep2 Rd5",
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"report filtered reads": false,
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"timepoint": 5,
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"variants": {
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"min count": 0,
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"use aligner": false,
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"wild type": {
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"coding": true,
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"reference offset": 0,
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"sequence": "GATTTATCTGCTCTTCGCGTTGAAGAAGTACAAAATGTCATTAATGCTATGCAGAAAATCTTAGAGTGTCCCATCTGCCTGGAGTTGATC"
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}
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}
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}
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],
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"name": "Rep2"
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}
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]
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}
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],
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"name": "BRCA1 Example",
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"output directory": "Results/"
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}

‎Data/BRCA1_example_barcodemap.txt.bz2‎

153 KB
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‎Data/BRCA1_input_sample.fq.bz2‎

47.4 MB
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‎Data/BRCA1_rep1_rd2.fq.bz2‎

8.75 MB
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‎Data/BRCA1_rep1_rd5.fq.bz2‎

14.3 MB
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‎Data/BRCA1_rep2_rd2.fq.bz2‎

4.9 MB
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‎Data/BRCA1_rep2_rd5.fq.bz2‎

7.31 MB
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