When opening large repositories, it can easily happen that there are more new commits on other branches than the current initial display limit for graph nodes (25 as far as I can tell).
If the latest commit on the current branch is not within this limit, that branch is not shown at all causing a bit of a broken layout.
Screenshots for better explanation:
Actual:

Expected:

To reproduce, clone my fork, stay on "master" branch and observe the "empty" branch to take up all the available commit graph nodes.
This seems to be somewhat related to the ongoing effort by @campersau and @jung-kim of optimizing for very large repositories.