Skip to content

Commit 8784d6b

Browse files
author
Robin Kobus
committed
info on datasets and example database
1 parent e421bfc commit 8784d6b

File tree

1 file changed

+18
-0
lines changed

1 file changed

+18
-0
lines changed

data/README.md

Lines changed: 18 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,18 @@
1+
Datasets
2+
-----
3+
The datasets HiSeq and MiSeq are included in Kraken's "Timing data" at:
4+
http://ccb.jhu.edu/software/kraken/
5+
6+
The datasets wgsim200 and wgsim250 can be downloaded at:
7+
https://seafile.rlp.net/f/ab4ac98d55/
8+
9+
10+
Example light database
11+
-----
12+
An example light database containing bacterial species-level targets can be downloaded at:
13+
https://seafile.rlp.net/f/f2c9aa6fd6/
14+
15+
If CuCLARK was installed and the database extracted to `<directoryDB>` the classification can be executed with:
16+
```
17+
./CuCLARK-l -T <directoryDB/targets_0.txt> -D <directoryDB/> -O <fileObjects> -R <fileResults> -n <numberofthreads>
18+
```

0 commit comments

Comments
 (0)