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Merge pull request #399 from mpsonntag/cl_script_tests
Command line script tests LGTM
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‎test/resources/scripts/odml_convert/conversion_example_A.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
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<odML version="1">
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<section>
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<property>
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<value>0.0<unit>um</unit></value>
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<name>Depth</name>
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</property>
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<property>
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<value>P-unit</value>
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<name>CellType</name>
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</property>
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<property>
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<value>Nerve</value>
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<name>Structure</name>
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</property>
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<property>
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<value>0.1</value>
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<name>CV</name>
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</property>
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<property>
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<value>12.8<unit>Hz</unit></value>
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<name>Baseline rate</name>
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</property>
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<name>Cell</name>
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<type>Cell</type>
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</section>
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<section>
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<property>
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<value>weak response</value>
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<name>Comment</name>
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</property>
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<property>
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<value>2020-06-24-ab</value>
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<name>Name</name>
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</property>
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<property>
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<value>Good</value>
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<name>Recording quality</name>
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</property>
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<property>
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<value>12.8.7 (20/06/24)</value>
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<name>Software version</name>
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</property>
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<property>
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<value>Ex Perimenter</value>
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<name>Experimenter</name>
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</property>
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<property>
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<value>Acquisition</value>
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<name>Mode</name>
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</property>
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<property>
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<value>conversion_example.xml</value>
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<name>File</name>
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</property>
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<property>
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<value>16:35:51</value>
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<name>Time</name>
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</property>
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<property>
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<value>2020-06-24</value>
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<name>Date</name>
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</property>
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<property>
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<value>100<unit>m</unit></value>
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<name>Recording duration</name>
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</property>
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<property>
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<value>./odml_convert</value>
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<name>Folder</name>
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</property>
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<property>
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<value>SomeEphysSoftware</value>
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<name>Software</name>
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</property>
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<name>Recording</name>
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<type>Recording</type>
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</section>
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<section>
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<property>
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<value>12.0<unit>Hz</unit></value>
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<name>Firing Rate1</name>
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</property>
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<property>
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<value>12.0<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<property>
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<value>0.1</value>
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<name>P-Value1</name>
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</property>
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<name>Cell properties</name>
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<type>Cell properties</type>
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</section>
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<section>
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<property>
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<value>unknown</value>
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<name>Gender</name>
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</property>
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<property>
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<value>Xen Omorph</value>
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<name>Species</name>
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</property>
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<property>
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<value>10.0<unit>cm</unit></value>
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<name>Size</name>
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</property>
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<property>
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<value>1.0<unit>mV</unit></value>
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<name>Transdermal amplitude</name>
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</property>
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<property>
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<value>1.4<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<name>Subject</name>
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<type>Subject</type>
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</section>
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<author>tester</author>
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</odML>

‎test/resources/scripts/odml_convert/conversion_example_B.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
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<odML version="1">
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<section>
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<property>
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<value>0.0<unit>um</unit></value>
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<name>Depth</name>
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</property>
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<property>
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<value>P-unit</value>
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<name>CellType</name>
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</property>
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<property>
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<value>Nerve</value>
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<name>Structure</name>
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</property>
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<property>
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<value>0.1</value>
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<name>CV</name>
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</property>
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<property>
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<value>12.8<unit>Hz</unit></value>
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<name>Baseline rate</name>
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</property>
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<name>Cell</name>
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<type>Cell</type>
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</section>
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<section>
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<property>
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<value>weak response</value>
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<name>Comment</name>
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</property>
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<property>
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<value>2020-06-24-ab</value>
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<name>Name</name>
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</property>
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<property>
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<value>Good</value>
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<name>Recording quality</name>
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</property>
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<property>
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<value>12.8.7 (20/06/24)</value>
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<name>Software version</name>
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</property>
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<property>
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<value>Ex Perimenter</value>
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<name>Experimenter</name>
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</property>
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<property>
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<value>Acquisition</value>
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<name>Mode</name>
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</property>
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<property>
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<value>conversion_example.xml</value>
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<name>File</name>
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</property>
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<property>
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<value>16:35:51</value>
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<name>Time</name>
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</property>
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<property>
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<value>2020-06-24</value>
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<name>Date</name>
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</property>
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<property>
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<value>100<unit>m</unit></value>
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<name>Recording duration</name>
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</property>
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<property>
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<value>./odml_convert</value>
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<name>Folder</name>
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</property>
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<property>
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<value>SomeEphysSoftware</value>
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<name>Software</name>
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</property>
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<name>Recording</name>
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<type>Recording</type>
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</section>
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<section>
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<property>
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<value>12.0<unit>Hz</unit></value>
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<name>Firing Rate1</name>
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</property>
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<property>
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<value>12.0<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<property>
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<value>0.1</value>
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<name>P-Value1</name>
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</property>
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<name>Cell properties</name>
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<type>Cell properties</type>
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</section>
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<section>
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<property>
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<value>unknown</value>
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<name>Gender</name>
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</property>
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<property>
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<value>Xen Omorph</value>
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<name>Species</name>
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</property>
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<property>
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<value>10.0<unit>cm</unit></value>
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<name>Size</name>
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</property>
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<property>
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<value>1.0<unit>mV</unit></value>
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<name>Transdermal amplitude</name>
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</property>
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<property>
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<value>1.4<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<name>Subject</name>
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<type>Subject</type>
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</section>
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<author>tester</author>
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</odML>

‎test/resources/scripts/odml_convert/test_broken/empty.xml‎

Whitespace-only changes.

‎test/resources/scripts/odml_convert/test_broken/invalid_xml.xml‎

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<?xml version="1.0" encoding="ISO-8859-1"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl" xmlns:odml="http://www.g-node.org/odml"?>
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<odML version="1">
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<repository>http://portal.g-node.org/odml/terminologies/v1.0/terminologies.xml</repository>
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<section>
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<type>Recording</type>
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<name>Recording-some-date-ah</name>
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<property>
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<name>Temperature</name>
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<value>24<type>float</type><unit><B0>C</unit></value>
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</property>
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</section>
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</odML>

‎test/resources/scripts/odml_convert/test_recursive/conversion_example_sub_root.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
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<odML version="1">
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<section>
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<property>
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<value>0.0<unit>um</unit></value>
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<name>Depth</name>
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</property>
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<property>
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<value>P-unit</value>
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<name>CellType</name>
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</property>
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<property>
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<value>Nerve</value>
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<name>Structure</name>
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</property>
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<property>
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<value>0.1</value>
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<name>CV</name>
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</property>
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<property>
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<value>12.8<unit>Hz</unit></value>
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<name>Baseline rate</name>
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</property>
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<name>Cell</name>
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<type>Cell</type>
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</section>
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<author>tester</author>
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</odML>

‎test/resources/scripts/odml_convert/test_recursive/sub/conversion_example_sub_sub.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
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<odML version="1">
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<section>
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<property>
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<value>0.0<unit>um</unit></value>
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<name>Depth</name>
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</property>
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<property>
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<value>P-unit</value>
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<name>CellType</name>
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</property>
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<property>
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<value>Nerve</value>
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<name>Structure</name>
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</property>
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<property>
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<value>0.1</value>
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<name>CV</name>
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</property>
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<property>
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<value>12.8<unit>Hz</unit></value>
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<name>Baseline rate</name>
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</property>
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<name>Cell</name>
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<type>Cell</type>
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</section>
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<author>tester</author>
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</odML>

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