refactor 'database' to scans_database

Author: skbarber

…ils/geecs_data_utils/database/builder.py …ecs_data_utils/scans_database/builder.pyGEECS-Data-Utils/geecs_data_utils/database/builder.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/builder.py GEECS-Data-Utils/geecs_data_utils/database/builder.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/builder.py

@@ -1,5 +1,5 @@
 """
-Provides utilities to construct partitioned parquet 'scans database'.
+Provides utilities to construct partitioned parquet 'scans scans_database'.
 
 Structured metadata records (`ScanEntry`) are created for each scan.
 Supports streaming scan metadata to Parquet format for persistent
@@ -30,8 +30,8 @@
 
 from geecs_data_utils.scan_data import ScanData
 from geecs_data_utils.utils import ScanTag
-from geecs_data_utils.database.entries import ScanEntry, ScanMetadata
-from geecs_data_utils.database.database import ScanDatabase
+from geecs_data_utils.scans_database.entries import ScanEntry, ScanMetadata
+from geecs_data_utils.scans_database.database import ScanDatabase
 from geecs_data_utils.type_defs import parse_ecs_dump
 
 logger = logging.getLogger(__name__)
@@ -216,7 +216,7 @@ def build_from_directory(
         Returns
         -------
         ScanDatabase
-            In-memory database containing all found scan entries.
+            In-memory scans_database containing all found scan entries.
         """
         db = ScanDatabase()
         scan_counter = 0
@@ -281,7 +281,7 @@ def stream_to_parquet(
                 }
             except Exception as e:
                 logger.warning(
-                    f"Could not load existing database for deduplication: {e}"
+                    f"Could not load existing scans_database for deduplication: {e}"
                 )
 
         buffer = []

…ls/geecs_data_utils/database/database.py …cs_data_utils/scans_database/database.pyGEECS-Data-Utils/geecs_data_utils/database/database.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/database.py GEECS-Data-Utils/geecs_data_utils/database/database.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/database.py

@@ -1,5 +1,5 @@
 """
-Provides a searchable interface to a partitioned scans database stored in Parquet format.
+Provides a searchable interface to a partitioned scans scans_database stored in Parquet format.
 
 This module defines the `ScanDatabase` class, which enables efficient querying of
 experiment scan metadata stored as a Hive-style partitioned Parquet dataset (partitioned

…ils/geecs_data_utils/database/entries.py …ecs_data_utils/scans_database/entries.pyGEECS-Data-Utils/geecs_data_utils/database/entries.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/entries.py GEECS-Data-Utils/geecs_data_utils/database/entries.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/entries.py

@@ -1,5 +1,5 @@
 """
-Scan database entry schema.
+Scan scans_database entry schema.
 
 This module defines structured models for representing scan entries and
 associated metadata in the GEECS data ecosystem. These models are used
@@ -17,7 +17,7 @@
 Notes
 -----
 These models are primarily intended for use in building and querying a
-structured scan database using the `ScanDatabase` class. The models use
+structured scan scans_database using the `ScanDatabase` class. The models use
 Pydantic for data validation and serialization.
 """
 

…ecs_data_utils/database/filter_models.py …ta_utils/scans_database/filter_models.pyGEECS-Data-Utils/geecs_data_utils/database/filter_models.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/filter_models.py GEECS-Data-Utils/geecs_data_utils/database/filter_models.py renamed to GEECS-Data-Utils/geecs_data_utils/scans_database/filter_models.py

@@ -14,9 +14,9 @@
 from pathlib import Path
 from datetime import date
 
-from geecs_data_utils.database.builder import ScanDatabaseBuilder
-from geecs_data_utils.database.database import ScanDatabase
-from geecs_data_utils.database.entries import ScanEntry
+from geecs_data_utils.scans_database.builder import ScanDatabaseBuilder
+from geecs_data_utils.scans_database.database import ScanDatabase
+from geecs_data_utils.scans_database.entries import ScanEntry
 
 
 TEST_DATA_ROOT = Path("/Volumes/hdna2/data")
@@ -27,7 +27,7 @@ def test_scan_database_builder_runs():
     Test building a ScanDatabase from a single scan directory.
 
     This test verifies that:
-    - The database is built without error.
+    - The scans_database is built without error.
     - A single scan entry is returned.
     - The scan entry contains valid metadata, file paths, and devices.