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cleanup use of logarithms #152

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cleanup use of logarithms

cleanup use of logarithms #152

Workflow file for this run

.github/workflows/continuousIntegration.yml at 9acef98
name: hpcReactCI
on:
push:
branches: [ "main" ]
pull_request:
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
get_docker_image_tag_hash:
runs-on: ubuntu-24.04
outputs:
DOCKER_IMAGE_TAG_HASH: ${{ steps.extract_docker_image_tag_hash.outputs.DOCKER_IMAGE_TAG_HASH }}
steps:
- name: Extract docker image tag hash
id: extract_docker_image_tag_hash
run: |
echo "DOCKER_IMAGE_TAG_HASH=8222ff90b7e0083101204ce7f2c476ec23785a03" >> "$GITHUB_OUTPUT"
# code_style:
# needs: [check_pull_request_is_not_a_draft]
# runs-on: ubuntu-24.04
# steps:
# - name: Checkout Repository
# uses: actions/[email protected]
# with:
# submodules: true
# lfs: false
# - name: Check style
# env:
# DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9
# CMAKE_BUILD_TYPE: Release
# BUILD_AND_TEST_ARGS: --test-code-style
# run: ./scripts/ci_build_and_test.sh
doxygen_check:
runs-on: ubuntu-24.04
needs:
- get_docker_image_tag_hash
steps:
- name: Checkout Repository
uses: actions/[email protected]
with:
submodules: true
lfs: false
- name: Check doxygen
env:
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang-${{ needs.get_docker_image_tag_hash.outputs.DOCKER_IMAGE_TAG_HASH }}
HOST_CONFIG: hostconfigs/environment.cmake
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Release
BUILD_AND_TEST_ARGS: --test-doxygen
run: ./scripts/ci_build_and_test.sh
code_checks:
runs-on: ubuntu-24.04
needs:
- get_docker_image_tag_hash
steps:
- name: Checkout Repository
uses: actions/[email protected]
with:
submodules: true
lfs: false
- name: code_checks
env:
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang-${{ needs.get_docker_image_tag_hash.outputs.DOCKER_IMAGE_TAG_HASH }}
HOST_CONFIG: hostconfigs/environment.cmake
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Release
BUILD_AND_TEST_ARGS: --code-checks
run: ./scripts/ci_build_and_test.sh
linux_builds:
name: ${{matrix.name}}
runs-on: ${{matrix.RUNS_ON}}
needs:
- get_docker_image_tag_hash
strategy:
# Set fail-fast to false to ensure that feedback is delivered for all matrix combinations. Consider changing this to true when your workflow is stable.
fail-fast: false
matrix:
include:
- name: rocky-gcc-dbg (rockylinux8, gcc 14, Release)
DOCKER_REPOSITORY: geosx/rockylinux:8-gcc
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /opt/rh/gcc-toolset-13/root/usr/bin/g++
CMAKE_C_COMPILER: /opt/rh/gcc-toolset-13/root/usr/bin/gcc
CMAKE_BUILD_TYPE: Debug
- name: rocky-gcc-rel (rockylinux8, gcc 14, Release)
DOCKER_REPOSITORY: geosx/rockylinux:8-gcc
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /opt/rh/gcc-toolset-13/root/usr/bin/g++
CMAKE_C_COMPILER: /opt/rh/gcc-toolset-13/root/usr/bin/gcc
CMAKE_BUILD_TYPE: Release
- name: rocky-clang-dbg (rockylinux8, clang-15, Debug)
DOCKER_REPOSITORY: geosx/rockylinux:8-clang
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Debug
- name: rocky-clang-rel (rockylinux8, clang-15, Release)
DOCKER_REPOSITORY: geosx/rockylinux:8-clang
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Release
- name: ubuntu24-gcc11-dbg (ubuntu-24, gcc 11.4.0, Release)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-gcc
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/g++
CMAKE_C_COMPILER: /usr/bin/gcc
CMAKE_BUILD_TYPE: Debug
- name: ubuntu24-gcc11-rel (ubuntu-24, gcc 11.4.0, Release)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-gcc
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/g++
CMAKE_C_COMPILER: /usr/bin/gcc
CMAKE_BUILD_TYPE: Release
- name: ubuntu24-clang18-dbg (ubuntu-24, clang-18.0.0, Debug)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Debug
- name: ubuntu24-clang18-rel (ubuntu-24, clang-18.0.0, Release)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang
RUNS_ON: ubuntu-24.04
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Release
- name: ubuntu24-gcc11-cuda12-rel (ubuntu-24, gcc 11.4.0, cuda-12.9.1, Release)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-gcc-cuda12.9
RUNS_ON: streak2
CMAKE_CXX_COMPILER: /usr/bin/g++
CMAKE_C_COMPILER: /usr/bin/gcc
CMAKE_BUILD_TYPE: Release
ENABLE_CUDA: ON
CMAKE_CUDA_ARCHITECTURES: "86"
NPROC: 4
DOCKER_RUN_ARGS: "--cpus=4 --memory=64g --runtime=nvidia --gpus all"
- name: ubuntu24-gcc11-cuda12-dbg (ubuntu-24, gcc 11.4.0, cuda-12.9.1, Debug)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-gcc-cuda12.9
RUNS_ON: streak2
CMAKE_CXX_COMPILER: /usr/bin/g++
CMAKE_C_COMPILER: /usr/bin/gcc
CMAKE_BUILD_TYPE: Debug
ENABLE_CUDA: ON
CMAKE_CUDA_ARCHITECTURES: "86"
NPROC: 4
DOCKER_RUN_ARGS: "--cpus=4 --memory=64g --runtime=nvidia --gpus all"
- name: ubuntu24-clang14-cuda12-rel (ubuntu-24, clang-14.0.0, cuda-12.9.1, Release)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang-cuda12.9
RUNS_ON: streak2
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Release
ENABLE_CUDA: ON
CMAKE_CUDA_ARCHITECTURES: "86"
NPROC: 4
DOCKER_RUN_ARGS: "--cpus=4 --memory=64g --runtime=nvidia --gpus all"
- name: ubuntu24-clang14-cuda12-dbg (ubuntu-24, clang-14.0.0, cuda-12.9.1, Debug)
DOCKER_REPOSITORY: geosx/ubuntu:24.04-clang-cuda12.9
RUNS_ON: streak2
CMAKE_CXX_COMPILER: /usr/bin/clang++
CMAKE_C_COMPILER: /usr/bin/clang
CMAKE_BUILD_TYPE: Debug
ENABLE_CUDA: ON
CMAKE_CUDA_ARCHITECTURES: "86"
NPROC: 4
DOCKER_RUN_ARGS: "--cpus=4 --memory=64g --runtime=nvidia --gpus all"
steps:
- name: Checkout Repository
uses: actions/[email protected]
with:
submodules: true
lfs: false
- name: Print environment
run: printenv
- name: Build and test
env:
DOCKER_REPOSITORY: ${{ matrix.DOCKER_REPOSITORY }}-${{ needs.get_docker_image_tag_hash.outputs.DOCKER_IMAGE_TAG_HASH }}
CMAKE_CXX_COMPILER: ${{ matrix.CMAKE_CXX_COMPILER }}
CMAKE_C_COMPILER: ${{ matrix.CMAKE_C_COMPILER }}
CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }}
ENABLE_CUDA: ${{ matrix.ENABLE_CUDA }}
CMAKE_CUDA_ARCHITECTURES: ${{ matrix.CMAKE_CUDA_ARCHITECTURES }}
NPROC: ${{ matrix.NPROC }}
BUILD_AND_TEST_ARGS: ${{ matrix.BUILD_AND_TEST_ARGS }} --build-exe
DOCKER_RUN_ARGS: ${{ matrix.DOCKER_RUN_ARGS }}
HOST_CONFIG: hostconfigs/environment.cmake
run: ./scripts/ci_build_and_test.sh
code_coverage:
runs-on: ubuntu-22.04
needs:
- get_docker_image_tag_hash
steps:
- name: Checkout Repository
uses: actions/[email protected]
with:
submodules: true
lfs: false
- name: run code coverage
env:
DOCKER_REPOSITORY: geosx/ubuntu:22.04-b838c3153fadcfd4cd37e4859a4b172581e08417
HOST_CONFIG: hostconfigs/environment.cmake
CMAKE_CXX_COMPILER: /usr/bin/g++
CMAKE_C_COMPILER: /usr/bin/gcc
CMAKE_BUILD_TYPE: Debug
BUILD_AND_TEST_ARGS: "--build-exe --code-coverage"
run: ./scripts/ci_build_and_test.sh
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
with:
files: hpcReact_coverage.info.cleaned
fail_ci_if_error: true
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
check_that_all_jobs_succeeded:
runs-on: ubuntu-24.04
needs:
- get_docker_image_tag_hash
- linux_builds
- doxygen_check
- code_checks
if: ${{ always() }}
env:
RETURN_VAL: |
${{
needs.linux_builds.result == 'success' &&
needs.doxygen_check.result == 'success' &&
needs.code_checks.result == 'success'
}}
steps:
- name: PR Success
if: ${{ contains(env.RETURN_VAL, 'true') }}
run: "true"
- name: PR Failure
if: ${{ contains(env.RETURN_VAL, 'false') }}
run: "false"