code coverage

Author: rrsettgast

.github/workflows/continuousIntegration.yml

@@ -1,4 +1,4 @@
-name: HPCReactCI
+name: hpcReactCI
 
 on:
   push:
@@ -257,7 +257,7 @@ jobs:
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         with:
-          files: hpcreact_coverage.info.cleaned
+          files: hpcReact_coverage.info.cleaned
           fail_ci_if_error: true
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

CMakeLists.txt

@@ -15,7 +15,7 @@ endif()
 
 if( NOT is_submodule )
     message( "not a submodule")
-    project( HPCReact LANGUAGES CXX C )
+    project( hpcReact LANGUAGES CXX C )
 
     set( BLT_SOURCE_DIR ${PROJECT_SOURCE_DIR}/cmake/blt CACHE PATH "" )
     set( BLT_CXX_STD "c++17" CACHE STRING "Version of C++ standard" FORCE )

README.md

@@ -1,2 +1,2 @@
-# HPCReact
+# hpcReact
 Package for modeling of chemical reactions on High Performance Computing Systems

cmake/CMakeBasics.cmake

@@ -6,6 +6,7 @@ else()
 
 endif()
 
+option( ENABLE_COVERAGE "Enable coverage" OFF )
 #set( SHIVA_BUILD_OBJ_LIBS OFF CACHE BOOL "" )
 
 

cmake/Macros.cmake

@@ -1,4 +1,4 @@
-macro(HPCReact_add_code_checks)
+macro(hpcReact_add_code_checks)
 
     set(options)
     set(singleValueArgs PREFIX UNCRUSTIFY_CFG_FILE )
@@ -69,4 +69,4 @@ macro(HPCReact_add_code_checks)
                                      RUNNER ctest -E 'blt_gtest_smoke|testCppCheck|testClangTidy|testUncrustifyCheck|testDoxygenCheck|testCppCheck|testClangTidy'
                                      SOURCE_DIRECTORIES ${PROJECT_SOURCE_DIR}/src )
     endif()
-endmacro(HPCReact_add_code_checks)
+endmacro(hpcReact_add_code_checks)

scripts/ci_build_and_test.sh

@@ -2,7 +2,7 @@
 env
 
 BUILD_DIR=${GITHUB_WORKSPACE}
-BUILD_DIR_MOUNT_POINT=/tmp/HPCReact
+BUILD_DIR_MOUNT_POINT=/tmp/hpcReact
 
 
 if [[ -z "${NPROC}" ]]; then
@@ -12,7 +12,7 @@ fi
 # We need to keep track of the building container (hence the `CONTAINER_NAME`)
 # so we can extract the data from it later (if needed). Another solution would have been to use a mount point,
 # but that would not have solved the problem for the TPLs (we would require extra action to copy them to the mount point).
-CONTAINER_NAME=hpcreact_build
+CONTAINER_NAME=hpcReact_build
 
 docker run \
   --rm \

scripts/ci_build_and_test_in_container.sh

@@ -89,8 +89,8 @@ fi
 
 if [[ "$*" == *--code-coverage* ]]; then
   or_die make -j ${NPROC} VERBOSE=1
-  or_die make hpcreact_coverage
-  cp -r ${HPCREACT_BUILD_DIR}/hpcreact_coverage.info.cleaned /tmp/HPCReact/hpcreact_coverage.info.cleaned
+  or_die make hpcReact_coverage
+  cp -r ${HPCREACT_BUILD_DIR}/hpcReact_coverage.info.cleaned /tmp/hpcReact/hpcReact_coverage.info.cleaned
 fi
 
 

src/CMakeLists.txt

@@ -55,7 +55,7 @@ add_subdirectory( reactions/bulkGeneric/unitTests )
 add_subdirectory( common/unitTests )
 add_subdirectory( docs )
 
-HPCReact_add_code_checks( PREFIX hpcReact
+hpcReact_add_code_checks( PREFIX hpcReact
                           UNCRUSTIFY_CFG_FILE ${PROJECT_SOURCE_DIR}/src/uncrustify.cfg
                           EXCLUDES "blt/*" )
 

src/docs/doxygen/CMakeLists.txt

@@ -1,2 +1,2 @@
-blt_add_doxygen_target( hpcreact_doxygen )
+blt_add_doxygen_target( hpcReact_doxygen )
 

src/docs/doxygen/Doxyfile.in

@@ -42,7 +42,7 @@ DOXYFILE_ENCODING      = UTF-8
 # title of most generated pages and in a few other places.
 # The default value is: My Project.
 
-PROJECT_NAME           = "HPCReact"
+PROJECT_NAME           = "hpcReact"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. This
 # could be handy for archiving the generated documentation or if some version