MAPL 2.9.0

[mathomp4]

This is release of MAPL 2.9.0 tests as zero-diff to 2.8.10 in regards to GEOS. It contains many changes as detailed below including some bugfixes.

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From CHANGELOG.md

Added

• Added option to flip vertical orientation of checkpoint files from the provided orientation which is assumed to be down (TOA -> surface) as index increases. User can provide a per grid comp INTERNAL_CHECKPOINT_POSITIVE: and IMPORT_CHECKPOINT_POSITIVE: option with the default as down. If this is set to up 3D fields that are vlocationedge or vlocationcenter will be flipped on writing and positive in the lev variable will be up. Likewise restarts with positive up will be flipped relative to the orientation in the file.
• Added GEOSldas CI build test
• Added option to regrid to a regional lat-lon grid in the Regrid_Util.x utility
• Added scc badges to README
• Added Service-Services functionality. Components could advertise services they can provide, they can request services to be done
  to a list of variables, and current components could connect services.
• Added EditorConfig file
  • 4 spaces for Python
  • 2 spaces for CMake and YAML
• Preload available macros in CMake package configuration file.

Changed

• Moved newcfio modules from base into new griddedio directory
  • Renamed newCFIO modules and routines to GriddedIO
• Refactored ExtData modules. Because of the dependencies, the following changes were also done:
  • Moved Collection ExtData modules into griddedio directory. Removed the Ext prefix for collection modules and subroutines and types
  • Moved BundleRead and BundleWrite modules from base to griddedio
  • Moved Regrid_Util.F90 from base to griddedio due to griddedio dependency on base. Executable still generated in install/bin
• Updated components.yaml
  • ESMA_cmake v3.6.5 (Bug fix for NAG, support for mepo styles, Release flags are now vectorized, Fix for BASEDIR)
  • ESMA_env v3.4.1 (Support for Cascade Lake, moves to Intel 2021.2)
• Refactored MAPL_IO by separating it into a Binary (BinIO.F90) and NetCDF (NCIO.F90) modules. Shared subroutines and
  types have been moved to FileIOShared.F90. MAPL_IO becomes a package module to hold these aforementioned three modules.

Fixed

• Fixed Running SCM with GNU/Open MPI: Crash in MAPL_IO #338. Added a workaround for a gfortran bug that handles end-of-file incorrectly (returns IOSTAT=5001).
• Fixed ESMF logging errors from MAPL_IO (Info::get() ESMF Logging Errors with MAPL Develop  #1032)
• Make BUILD_WITH_PFLOGGER a CMake option()
• MAPL finds yaFyaml in CMake through PFLOGGER::pflogger, so if you build the stub, specifically add it as a dependency
• Fix annoying misspelling of FLAP

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What's Changed

• Feature/bmauer/Feature request: configurable lev positive attribute in checkpoint files  #942 checkpoint positive handling by @bena-nasa in Feature/bmauer/#942 checkpoint positive handling #1029
• Add GEOSldas CI Build Tests to MAPL by @mathomp4 in Add GEOSldas CI Build Tests to MAPL #1033
• Refactors remaining ExtData Modules by @Gvilla1000-nasa in Refactors remaining ExtData Modules #1031
• Closes CircleCI Config has a lot of Duplicated Code #1034. Cleans up redundant CircleCI code by @mathomp4 in Closes #1034. Cleans up redundant CircleCI code #1036
• Closes Info::get() ESMF Logging Errors with MAPL Develop  #1032. Fix logging error with FLIPPED AttributeGet by @mathomp4 in Closes #1032. Fix logging error with FLIPPED AttributeGet #1039
• Auto GitFlow - main → develop by @github-actions in Auto GitFlow - main → develop #1043
• add options to regrid to regional lat-lon grid in Regrid_Util.x by @bena-nasa in add options to regrid to regional lat-lon grid in Regrid_Util.x #1041
• Bugfix/atrayno/Running SCM with GNU/Open MPI: Crash in MAPL_IO #338 enf of file gfortran bug by @atrayano in Bugfix/atrayno/#338 enf of file gfortran bug #1038
• Auto GitFlow - main → develop by @github-actions in Auto GitFlow - main → develop #1047
• Add scc badges by @mathomp4 in Add scc badges #1051
• Update to ESMA_cmake 3.5.7, ESMA_env 3.3.1 by @mathomp4 in Update to ESMA_cmake 3.5.7, ESMA_env 3.3.1 #1053
• Refactors MAPL_IO to separate Binary and NetCDF subroutines. by @Gvilla1000-nasa in Refactors MAPL_IO to separate Binary and NetCDF subroutines. #1055
• Fixes Info::get() ESMF Logging Errors with MAPL Develop  #1032...again. by @mathomp4 in Fixes #1032...again. #1057
• Changes to prettify CircleCI by @mathomp4 in Changes to prettify CircleCI #1066
• AT: Very first --alpha-- version of service-services. The code compil… by @atrayano in AT: Very first --alpha-- version of service-services. The code compil… #547
• Handmerge main into develop (2021-Oct-12) by @mathomp4 in Handmerge main into develop (2021-Oct-12) #1072
• Handmerge main hotfix into develop 2021-Oct-13 by @mathomp4 in Handmerge main hotfix into develop 2021-Oct-13 #1078
• Auto GitFlow - main → develop by @github-actions in Auto GitFlow - main → develop #1076
• Update ESMA_cmake and ESMA_env, other fixes by @mathomp4 in Update ESMA_cmake and ESMA_env, other fixes #1062
• Add EditorConfig File by @mathomp4 in Add EditorConfig File #1061
• Handmerge main to develop 2021-Oct-15 by @mathomp4 in Handmerge main to develop 2021-Oct-15 #1086
• Handmerge main to develop 2021-Oct-18 by @mathomp4 in Handmerge main to develop 2021-Oct-18 #1097
• Update to ESMA_cmake v3.6.5 and ESMA_env 3.4.1 by @mathomp4 in Update to ESMA_cmake v3.6.5 and ESMA_env 3.4.1 #1099
• Improve MAPL configuration for external projects by @rmontuoro in Improve MAPL configuration for external projects #1101
• Prepare for 2.9.0 Release by @mathomp4 in Prepare for 2.9.0 Release #1103
• Merge Develop into Main for 2.9.0 Release by @mathomp4 in Merge Develop into Main for 2.9.0 Release #1105

Full Changelog: v2.8.10...v2.9.0

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This discussion was created from the release MAPL 2.9.0.

[mathomp4]

@rmontuoro This is a Semver release with your update (and much more 😄). Please test to see if it works for you.

@LiamBindle Just want to keep you informed. I know GCHP is still at 2.6, but just so you know...