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Introducing GMAO ODAS obs sources (#444)
* initial changes * fix calc_scales and vertical corr. length configuration * add first set of ODAS obs * more obs * fix get_obs for multiple providers, missing obs, and add marine yamls * add cryosat and sentinel3b * add MERRA2 SST * fix blacklist, simplify generate B task * fix for using obs_providers as a list * fix code issues * take two
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‎src/swell/configuration/jedi/interfaces/geos_atmosphere/task_questions.yaml‎

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@@ -158,6 +158,8 @@ obs_experiment:
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obs_provider:
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default_value: ncdiag
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options:
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- ncdiag
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observations:
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default_value:

‎src/swell/configuration/jedi/interfaces/geos_marine/observations/adt_cryosat2n.yaml‎

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obs space:
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name: adt_cryosat2n
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obsdatain:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/adt_cryosat2n.{{window_begin}}.nc4'
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obsdataout:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/{{experiment_id}}.adt_cryosat2n.{{window_begin}}.nc4'
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simulated variables: [absoluteDynamicTopography]
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obs operator:
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name: ADT
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obs error:
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covariance model: diagonal
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obs filters:
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_area_fraction}
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minvalue: 0.9
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/sea_surface_temperature}
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minvalue: 15.0
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- filter: Background Check
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absolute threshold: 0.2
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
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minvalue: 500
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# - filter: Perform Action
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# action:
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# name: assign error
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# error function:
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# name: ObsFunction/LinearCombination
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# options:
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# variables: [mesoscale_representation_error@GeoVaLs,
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# absolute_dynamic_topography@ObsError]
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# coefs: [0.1,
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# 0.5]
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: -125
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# maxvalue: -90
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: 60
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# maxvalue: 110
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# - filter: Domain Check
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# where:
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# - variable: { name: GeoVaLs/sea_ice_area_fraction}
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# maxvalue: 0.00001
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/distance_from_coast}
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minvalue: 100e3

‎src/swell/configuration/jedi/interfaces/geos_marine/observations/adt_jason3.yaml‎

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obs space:
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name: adt_jason3
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obsdatain:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/adt_jason3.{{window_begin}}.nc4'
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obsdataout:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/{{experiment_id}}.adt_jason3.{{window_begin}}.nc4'
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simulated variables: [absoluteDynamicTopography]
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obs operator:
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name: ADT
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obs error:
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covariance model: diagonal
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obs filters:
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_area_fraction}
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minvalue: 0.9
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/sea_surface_temperature}
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minvalue: 15.0
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- filter: Background Check
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absolute threshold: 0.2
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
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minvalue: 500
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# - filter: Perform Action
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# action:
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# name: assign error
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# error function:
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# name: ObsFunction/LinearCombination
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# options:
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# variables: [mesoscale_representation_error@GeoVaLs,
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# absolute_dynamic_topography@ObsError]
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# coefs: [0.1,
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# 0.5]
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: -125
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# maxvalue: -90
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: 60
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# maxvalue: 110
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# - filter: Domain Check
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# where:
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# - variable: { name: GeoVaLs/sea_ice_area_fraction}
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# maxvalue: 0.00001
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/distance_from_coast}
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minvalue: 100e3

‎src/swell/configuration/jedi/interfaces/geos_marine/observations/adt_saral.yaml‎

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obs space:
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name: adt_saral
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obsdatain:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/adt_saral.{{window_begin}}.nc4'
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obsdataout:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/{{experiment_id}}.adt_saral.{{window_begin}}.nc4'
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simulated variables: [absoluteDynamicTopography]
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obs operator:
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name: ADT
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obs error:
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covariance model: diagonal
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obs filters:
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_area_fraction}
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minvalue: 0.9
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/sea_surface_temperature}
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minvalue: 15.0
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- filter: Background Check
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absolute threshold: 0.2
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
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minvalue: 500
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# - filter: Perform Action
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# action:
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# name: assign error
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# error function:
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# name: ObsFunction/LinearCombination
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# options:
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# variables: [mesoscale_representation_error@GeoVaLs,
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# absolute_dynamic_topography@ObsError]
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# coefs: [0.1,
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# 0.5]
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: -125
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# maxvalue: -90
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: 60
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# maxvalue: 110
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# - filter: Domain Check
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# where:
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# - variable: { name: GeoVaLs/sea_ice_area_fraction}
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# maxvalue: 0.00001
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/distance_from_coast}
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minvalue: 100e3

‎src/swell/configuration/jedi/interfaces/geos_marine/observations/adt_sentinel3a.yaml‎

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obs space:
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name: adt_sentinel3a
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obsdatain:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/adt_sentinel3a.{{window_begin}}.nc4'
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obsdataout:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/{{experiment_id}}.adt_sentinel3a.{{window_begin}}.nc4'
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simulated variables: [absoluteDynamicTopography]
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obs operator:
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name: ADT
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obs error:
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covariance model: diagonal
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obs filters:
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_area_fraction}
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minvalue: 0.9
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/sea_surface_temperature}
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minvalue: 15.0
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- filter: Background Check
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absolute threshold: 0.2
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
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minvalue: 500
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# - filter: Perform Action
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# action:
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# name: assign error
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# error function:
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# name: ObsFunction/LinearCombination
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# options:
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# variables: [{name: GeoVaLs/mesoscale_representation_error},
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# {name: ObsError/absolute_dynamic_topography}]
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# # variables: [mesoscale_representation_error@GeoVaLs,
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# # absolute_dynamic_topography@ObsError]
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# coefs: [0.1,
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# 0.5]
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: -125
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# maxvalue: -90
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: 60
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# maxvalue: 110
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# - filter: Domain Check
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# where:
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# - variable: { name: GeoVaLs/sea_ice_area_fraction}
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# maxvalue: 0.00001
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/distance_from_coast}
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minvalue: 100e3

‎src/swell/configuration/jedi/interfaces/geos_marine/observations/adt_sentinel3b.yaml‎

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obs space:
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name: adt_sentinel3b
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obsdatain:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/adt_sentinel3b.{{window_begin}}.nc4'
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obsdataout:
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engine:
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type: H5File
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obsfile: '{{cycle_dir}}/{{experiment_id}}.adt_sentinel3b.{{window_begin}}.nc4'
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simulated variables: [absoluteDynamicTopography]
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obs operator:
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name: ADT
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obs error:
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covariance model: diagonal
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obs filters:
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_area_fraction}
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minvalue: 0.9
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/sea_surface_temperature}
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minvalue: 15.0
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- filter: Background Check
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absolute threshold: 0.2
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- filter: Domain Check
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where:
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- variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
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minvalue: 500
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# - filter: Perform Action
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# action:
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# name: assign error
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# error function:
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# name: ObsFunction/LinearCombination
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# options:
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# variables: [{name: GeoVaLs/mesoscale_representation_error},
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# {name: ObsError/absolute_dynamic_topography}]
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# # variables: [mesoscale_representation_error@GeoVaLs,
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# # absolute_dynamic_topography@ObsError]
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# coefs: [0.1,
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# 0.5]
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: -125
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# maxvalue: -90
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# - filter: BlackList
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# where:
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# - variable:
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# name: MetaData/latitude
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# minvalue: -65
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# maxvalue: -30
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# - variable:
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# name: MetaData/longitude
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# minvalue: 60
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# maxvalue: 110
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# - filter: Domain Check
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# where:
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# - variable: { name: GeoVaLs/sea_ice_area_fraction}
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# maxvalue: 0.00001
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- filter: Domain Check
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where:
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- variable: { name: GeoVaLs/distance_from_coast}
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minvalue: 100e3

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