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‎CHANGELOG.md‎

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## [2.0.5](https://github.com/GMOD/tabix-js/compare/v2.0.4...v2.0.5) (2025-03-18)
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## [2.0.4](https://github.com/GMOD/tabix-js/compare/v2.0.3...v2.0.4) (2024-12-18)
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## [2.0.3](https://github.com/GMOD/tabix-js/compare/v2.0.2...v2.0.3) (2024-12-18)
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## [2.0.2](https://github.com/GMOD/tabix-js/compare/v2.0.0...v2.0.2) (2024-12-12)
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# [2.0.0](https://github.com/GMOD/tabix-js/compare/v1.6.1...v2.0.0) (2024-12-12)
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## [1.6.1](https://github.com/GMOD/tabix-js/compare/v1.6.0...v1.6.1) (2024-12-07)
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# [1.6.0](https://github.com/GMOD/tabix-js/compare/v1.5.15...v1.6.0) (2024-11-30)

‎eslint.config.mjs‎

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import eslint from '@eslint/js'
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import eslintPluginUnicorn from 'eslint-plugin-unicorn'
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import importPlugin from 'eslint-plugin-import'
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import tseslint from 'typescript-eslint'
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export default tseslint.config(
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...tseslint.configs.recommended,
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...tseslint.configs.stylisticTypeChecked,
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...tseslint.configs.strictTypeChecked,
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eslintPluginUnicorn.configs['flat/recommended'],
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importPlugin.flatConfigs.recommended,
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eslintPluginUnicorn.configs.recommended,
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{
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rules: {
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'@typescript-eslint/no-unused-vars': [
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'@typescript-eslint/no-deprecated': 'off',
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'@typescript-eslint/restrict-plus-operands': 'off',
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'no-empty': 'off',
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'import/no-unresolved': 'off',
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'import/order': [
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'error',
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{
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named: true,
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'newlines-between': 'always',
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alphabetize: {
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order: 'asc',
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},
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groups: [
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'builtin',
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['external', 'internal'],
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['parent', 'sibling', 'index', 'object'],
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'type',
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],
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},
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],
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},
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},
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)

‎package.json‎

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"name": "@gmod/tabix",
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"version": "2.0.5",
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"description": "Read Tabix-indexed files, supports both .tbi and .csi indexes",
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"type": "module",
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"types": "./dist/index.d.ts",
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"exports": {
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"import": {
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"import": "./esm/index.js"
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},
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"require": {
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"require": "./dist/index.js"
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}
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},
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"license": "MIT",
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"repository": "GMOD/tabix-js",
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"main": "dist/index.js",
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"docs": "documentation readme --shallow src/tabixIndexedFile.ts --section TabixIndexedFile",
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"clean": "rimraf dist esm",
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"prebuild": "npm run clean && npm run lint",
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"build:esm": "tsc --outDir esm",
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"build:es5": "tsc --module commonjs --outDir dist",
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"build:esm": "tsc --target es2020 --outDir esm",
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"build:es5": "tsc --target es2020 --module commonjs --outDir dist",
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"build": "npm run build:esm && npm run build:es5",
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"postbuild": "webpack",
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"preversion": "npm run lint && npm test run && npm run build",
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"@eslint/eslintrc": "^3.1.0",
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"@eslint/js": "^9.9.0",
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"@types/node": "^20.11.16",
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"@typescript-eslint/eslint-plugin": "^8.0.1",
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"@typescript-eslint/parser": "^8.0.1",
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"@vitest/coverage-v8": "^3.0.1",
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"documentation": "^14.0.3",
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"eslint": "^9.9.0",
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"eslint-plugin-unicorn": "^57.0.0",
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"eslint-plugin-import": "^2.31.0",
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"eslint-plugin-unicorn": "^58.0.0",
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"prettier": "^3.3.3",
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"rimraf": "^6.0.1",
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"standard-changelog": "^6.0.0",

‎src/chunk.ts‎

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import VirtualOffset from './virtualOffset'
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import VirtualOffset from './virtualOffset.ts'
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// little class representing a chunk in the index
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export default class Chunk {

‎src/csi.ts‎

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import { unzip } from '@gmod/bgzf-filehandle'
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import VirtualOffset, { fromBytes } from './virtualOffset'
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import Chunk from './chunk'
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import { optimizeChunks } from './util'
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import IndexFile, { Options } from './indexFile'
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import { longFromBytesToUnsigned } from './long'
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import Chunk from './chunk.ts'
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import IndexFile, { Options } from './indexFile.ts'
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import { longFromBytesToUnsigned } from './long.ts'
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import { optimizeChunks } from './util.ts'
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import VirtualOffset, { fromBytes } from './virtualOffset.ts'
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const CSI1_MAGIC = 21582659 // CSI\1
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const CSI2_MAGIC = 38359875 // CSI\2

‎src/indexFile.ts‎

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import { GenericFilehandle } from 'generic-filehandle2'
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import VirtualOffset from './virtualOffset'
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import Chunk from './chunk'
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import Chunk from './chunk.ts'
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import VirtualOffset from './virtualOffset.ts'
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import type { GenericFilehandle } from 'generic-filehandle2'
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export interface Options {
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signal?: AbortSignal

‎src/tabixIndexedFile.ts‎

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import AbortablePromiseCache from '@gmod/abortable-promise-cache'
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import LRU from 'quick-lru'
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import { GenericFilehandle, RemoteFile, LocalFile } from 'generic-filehandle2'
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import { unzip, unzipChunkSlice } from '@gmod/bgzf-filehandle'
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import { checkAbortSignal } from './util'
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import IndexFile, { Options, IndexData } from './indexFile'
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import { LocalFile, RemoteFile } from 'generic-filehandle2'
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import LRU from 'quick-lru'
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import Chunk from './chunk.ts'
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import CSI from './csi.ts'
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import IndexFile, { IndexData, Options } from './indexFile.ts'
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import TBI from './tbi.ts'
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import { checkAbortSignal } from './util.ts'
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import Chunk from './chunk'
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import TBI from './tbi'
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import CSI from './csi'
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import type { GenericFilehandle } from 'generic-filehandle2'
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function isASCII(str: string) {
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// eslint-disable-next-line no-control-regex

‎src/tbi.ts‎

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import VirtualOffset, { fromBytes } from './virtualOffset'
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import Chunk from './chunk'
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import { unzip } from '@gmod/bgzf-filehandle'
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import { optimizeChunks, checkAbortSignal } from './util'
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import IndexFile, { Options } from './indexFile'
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import { longFromBytesToUnsigned } from './long'
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import Chunk from './chunk.ts'
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import IndexFile, { Options } from './indexFile.ts'
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import { longFromBytesToUnsigned } from './long.ts'
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import { checkAbortSignal, optimizeChunks } from './util.ts'
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import VirtualOffset, { fromBytes } from './virtualOffset.ts'
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const TBI_MAGIC = 21578324 // TBI\1
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const TAD_LIDX_SHIFT = 14

‎src/util.ts‎

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import Chunk from './chunk'
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import VirtualOffset from './virtualOffset'
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import Chunk from './chunk.ts'
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import VirtualOffset from './virtualOffset.ts'
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class AbortError extends Error {
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public code: string | undefined

‎test/csi.test.ts‎

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import { expect, test } from 'vitest'
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import { LocalFile } from 'generic-filehandle2'
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import VirtualOffset from '../src/virtualOffset'
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import { expect, test } from 'vitest'
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import CSI from '../src/csi'
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import VirtualOffset from '../src/virtualOffset'
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test('loads test.gff3.gz.csi', async () => {
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const ti = new CSI({

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