Merge remote-tracking branch 'upstream/master'

Author: GalinBistrev2

.github/actions/spelling/allow/names.txt

@@ -1,6 +1,8 @@
-Abdulrasool
 Abdelrhman
+Abdulrasool
 Abhigyan
+Abhinav
+Aditi
 Alexandru
 Alja
 Anandh
@@ -30,17 +32,23 @@ Ikarashi
 Ilieva
 Isemann
 JLange
+JRembser
+Jiayang
 Jomy
+Joshi
+Jurgaityt
 Kyiv
 LBNL
 Lattner
 Lavrijsen
+Li
 Liegeois
 Linev
 Mabille
 Manipal
 Matevz
 Mihaly
+Milind
 Militaru
 Mircho
 Mozil
@@ -94,8 +102,10 @@ aaronj
 aaronjomyjoseph
 abdelrhman
 abhi
+abhinav
 acherjan
 acherjee
+aditi
 aditya
 adityapand
 adityapandeycn
@@ -139,6 +149,10 @@ isaacmoralessantana
 izvekov
 jacklqiu
 jeaye
+jiayang
+jiayangli
+jonas
+joshi
 junaire
 kausik
 kchristin
@@ -151,6 +165,7 @@ ksunhokim
 kundu
 kundubaidya
 lange
+li
 lucas
 maksym
 manasi
@@ -160,6 +175,7 @@ mfoco
 mihail
 mihailmihov
 mihov
+milind
 mizvekov
 mozil
 mvassilev
@@ -173,6 +189,7 @@ pcanal
 penev
 purva
 quillpusher
+rembser
 rishabh
 rishabhsbali
 riya

.github/actions/spelling/allow/terms.txt

@@ -1,7 +1,9 @@
 AARCH
+AIML
 BGZF
 CINT
 CMSSW
+Caa
 Cppyy
 Debian
 EPC
@@ -10,54 +12,65 @@ GPT
 GSo
 GSoC
 HSF
+IIT
 JIT'd
 Jacobians
+Jurgaityt
 LLMs
 LLVM
+LULESH
 NVIDIA
 NVMe
+OMP
+OpenMP
 PTX
+Resugaring
+SBO
 Slib
 Softsusy
 Superbuilds
+TBR
 TFormula
 TTree
 aarch
+biodynamo
 bioinformatics
 blogs
 consteval
 cppyy
 cytokine
 cytokines
 gitlab
+gpu
 gridlay
 gsoc
-gpu
+jit
 jthread
+linkedin
 llm
 llvm
-pushforward
-linkedin
 microenvironments
+omp
+openmp
+pushforward
 pythonized
 ramview
 reoptimize
 samtools
 sitemap
 softsusy
+superbuilds
 vimeo
 www
 xcolors
+xcpp
+xdap
+xdebugger
 xeus
 xjson
+xlldb
 xmagics
 xplugin
 youtu
 youtube
 zenodo
-biodynamo
-Caa
-Jurgaityt
-Resugaring
-superbuilds
-TBR

.github/actions/spelling/expect.txt

@@ -1,4 +1,6 @@
 Reoptimization
+Resugaring
+optimizing
 genomics
 reoptimization
 sustainability

_data/contributors.yml

@@ -47,7 +47,7 @@
 
 
 
-=======
+
   associated: 1
   org: University of Plovdiv "Paisii Hilendarski"
   responsibilities: |
@@ -68,6 +68,21 @@
     Martin has research interest in the area of the compiler construction, analysis of complex software systems and bioinformatics.
     He has obtained his PhD in 2020 in the University of Plovdiv "Paisii Hilendarski" where he continued to develop his academic career.
 
+- name: Jonas Rembser
+  info: Senior Scientific Software Developer
+  photo: JRembser.png
+  email: [email protected]
+  education: PhD Particle Physics, Ecole Polytechnique, Paris, France (2020)
+  active: 1
+  associated: 1
+  org: CERN
+  responsibilities: |
+    After working with the CMS experiment for his PhD in particle physics, Jonas
+    joined CERN in 2021 to work on the ROOT project. He is takes care of the
+    statistical analysis libraries in ROOT, such as RooFit and Minuit 2, as well
+    as the ROOT Python interface. His other academic interests include
+    differential programming and financial markets.
+
 ################################################################################
 #                                     TEAM                                     #
 ################################################################################
@@ -284,7 +299,7 @@
       mentors: Martin Vassilev, Jonas Rembser, Fons Rademakers, Vassil Vassilev
 
 - name: Petro Mozil
-  photo: PetroMozil.jpeg
+  photo: PetroMozil.jpg
   info: "Google Summer of Code 2025 Contributor"
   email: [email protected]
   education: "Bachelor of Computer Science, Ukrainian Catholic University, Ukraine"
@@ -306,6 +321,7 @@
         and only the location of where they were called should be preserved.
       proposal: /assets/docs/petro_mozil_promosal_GSoC_2025.pdf
       mentors: Martin Vassilev, David Lange
+
 
 - name: Galin Bistrev
   photo: Bistrev.png
@@ -314,6 +330,7 @@
   education: "Nuclear and particle physics , Sofia University "St. Kliment  Ohridski , Bulgaria"
   github: "https://github.com/GalinBistrev2"
   active: 1
+  linkedin: "https://www.linkedin.com/in/galin-bistrev-905920369/"
   projects:
     - title: "Implementing AD in CMS Combine"
       status: Ongoing
@@ -328,7 +345,6 @@
         its internal representation to simple standalone C++ code, which is then used to generate the gradient code. 
         This can help collaborators without RooFit and Combine expertise to work with likelihoods from Combine at a lower level. 
         Adopting AD in Combine requires further collaboration between the parties.
-
         This project aims to bring this AD support into Combine. 
         Aspects include reducing some of the code in Combine in favor of more standard RooFit primitives; 
         Implementing AD support for Combine-specific RooFit primitives; 
@@ -337,6 +353,32 @@
         high-energy physics codes as well as the LLVM compiler ecosystem.
       mentors: Vasil Vassilev,David Lange,Jonas Rembser 
 
+
+
+- name: Jiayang Li
+  photo: Jiayang_Li.jpg
+  info: "Google Summer of Code 2025 Contributor"
+  email: [email protected]
+  education: "Bachelor of Computer Science, Shanghai University, China"
+  github: "https://github.com/Errant404"
+  active: 1
+  linkedin: "https://www.linkedin.com/in/errant404/"
+  projects:
+    - title: "Enable automatic differentiation of OpenMP programs with Clad"
+      status: Ongoing
+      description: |
+        This project aims to extend Clad, a Clang-based automatic differentiation
+        tool for C++, to support OpenMP programs. By enabling Clad to parse and
+        differentiate OpenMP directives such as parallel for, reduction, and atomic,
+        we will allow gradient computation in multi-threaded environments.
+        The implementation will include enhancements to Clad’s AST parsing,
+        variable scope analysis, and differentiation logic for both forward and
+        reverse modes. Deliverables include robust OpenMP AD support, comprehensive
+        tests, and user documentation.
+      proposal: /assets/docs/Jiayang_Li_Proposal_2025.pdf
+      mentors: Vassil Vassilev, Martin Vassilev
+      
+
 - name: Salvador de la Torre Gonzalez
   photo: salva_de_la_torre_gonzalez.jpg
   info: "Google Summer of Code 2025 Contributor"
@@ -421,6 +463,52 @@
       proposal: /assets/docs/Abdelrhman_Elrawy_Proposal_GSoC_2025.pdf
       mentors: Vassil Vassilev, Alexander Penev
 
+- name: Abhinav Kumar
+  photo: Abhinav.jpg
+  info: "Google Summer of Code 2025 Contributor"
+  email: [email protected]
+  education: "Computer Science & Engineering, Bachelor of Technology, Indian Institute of Technology(IIT) Indore, India"
+  github: "https://github.com/kr-2003"
+  active: 1
+  linkedin: "https://www.linkedin.com/in/abhinavkumar2105/"
+  projects:
+    - title: "Implementing Debugging Support for xeus-cpp"
+      status: Ongoing
+      description: |
+        This project aims at integrating debugging into the xeus-cpp kernel for 
+        Jupyter using LLDB and its Debug Adapter Protocol (lldb-dap). Modeled 
+        after xeus-python, it leverages LLDB’s Clang and JIT debugging support 
+        to enable breakpoints, variable inspection, and step-through execution. 
+        The modular design ensures compatibility with Jupyter’s frontend, 
+        enhancing interactive C++ development in notebooks.
+      proposal: /assets/docs/Abhinav_Kumar_Proposal_GSoC_2025.pdf
+      mentors: Anutosh Bhat, Vipul Cariappa, Aaron Jomy, Vassil Vassilev
+
+
+- name: Aditi Milind Joshi
+  photo: Aditi.jpeg
+  info: "Google Summer of Code 2025 Contributor"
+  email: [email protected]
+  github: "https://github.com/aditimjoshi"
+  linkedin: "https://www.linkedin.com/in/aditi-joshi-149280309/"
+  education: "B.Tech in Computer Science and Engineering (AIML), Manipal Institute of Technology, Manipal, India"
+  active: 1
+  projects:
+    - title: "Implement and improve an efficient, layered tape with prefetching capabilities"
+      status: Ongoing
+      description: |
+        Automatic Differentiation (AD) is a computational technique that enables 
+        efficient and precise evaluation of derivatives for functions expressed in code. 
+        Clad is a Clang-based automatic differentiation tool that transforms C++ source 
+        code to compute derivatives efficiently. A crucial component for AD in Clad is the 
+        tape, a stack-like data structure that stores intermediate values for reverse mode AD. 
+        While benchmarking, it was observed that the tape operations of the current implementation 
+        were significantly slowing down the program. This project aims to optimize and generalize 
+        the Clad tape to improve its efficiency, introduce multilayer storage, enhance thread safety, 
+        and enable CPU-GPU transfer.
+      proposal: /assets/docs/Aditi_Milind_Joshi_Proposal_2025.pdf
+      mentors: Aaron Jomy, David Lange, Vassil Vassilev
+
 - name: "This could be you!"
   photo: rock.jpg
   info: See <a href="/careers">openings</a> for more info

_data/standing_meetings.yml

@@ -3,6 +3,10 @@
   time_cest: "17:00"
   connect: "[Link to zoom](https://princeton.zoom.us/j/97915651167?pwd=MXJ1T2lhc3Z5QWlYbUFnMTZYQlNRdz09)"
   agenda:
+    - title: "Using ROOT in the field of genome sequencing"
+      date: 2025-05-21 17:00:00 +0200
+      speaker: "Aditya Pandey"
+      link: "[Slides](/assets/presentations/CaaS_Weekly_21_05_2025_Aditya_Pandey_Using_ROOT_for_genome_sequencing.pdf)"
     - title: "Activity Analysis: Summary"
       date: 2025-01-29 17:00:00 +0200
       speaker: "Maksym Andriichuk"
@@ -352,4 +356,8 @@
     - title: "Agent-Based Simulation of CAR-T Cell Therapy Using BioDynaMo Initial Presentation"
       date: 2025-05-21 17:00:00 +0200
       speaker: "Salvador de la Torre Gonzalez"
-      link: "[Slides](/assets/presentations/Salva_initial_presentation_me_and_project_CART.pdf)"
+      link: "[Slides](/assets/presentations/Salva_initial_presentation_me_and_project_CART.pdf)"
+    - title: "Support Usage of Thrust API in Clad Initial Presentation"
+      date: 2025-05-28 15:00:00 +0200
+      speaker: "Abdelrhman Elrawy"
+      link: "[Slides](/assets/presentations/Abdelrhman_initial_presentation_support_usage_of_Thrust_API_in_clad.pdf)"

_pages/team/abhinav-kumar.md

@@ -0,0 +1,10 @@
+---
+title: "Compiler Research - Team - Abhinav Kumar"
+layout: gridlay
+excerpt: "Compiler Research: Team members"
+sitemap: false
+permalink: /team/AbhinavKumar
+email: [email protected]
+---
+
+{% include team-profile.html %}

_pages/team/aditi-milind-joshi.md

@@ -0,0 +1,10 @@
+---
+title: "Compiler Research - Team - Aditi Milind Joshi"
+layout: gridlay
+excerpt: "Compiler Research: Team members"
+sitemap: false
+permalink: /team/AditiMilindJoshi
+email: [email protected]
+---
+
+{% include team-profile.html %}

_pages/team/jiayang-li.md

@@ -0,0 +1,10 @@
+---
+title: "Compiler Research - Team - Jiayang Li"
+layout: gridlay
+excerpt: "Compiler Research: Team members"
+sitemap: false
+permalink: /team/JiayangLi
+email: [email protected]
+---
+
+{% include team-profile.html %}

_pages/team/jonas-rembser.md

@@ -0,0 +1,10 @@
+---
+title: "Compiler Research - Team - Jonas Rembser"
+layout: gridlay
+excerpt: "Compiler Research: Team members"
+sitemap: false
+permalink: /team/JonasRembser
+email: [email protected]
+---
+
+{% include team-profile.html %}