Changed parameters for GUI interface not csv input

Author: jeremykoelmel

LN.R

@@ -6,11 +6,9 @@
 rm( list = ls() )
 
 # comment below for csv input
-# args = commandArgs(trailingOnly=TRUE)
+args = commandArgs(trailingOnly=TRUE)
 # uncomment below for csv input
-# args = c("C:/Users/Jeremy/Desktop/Desktop/Instrumentation/Software/MSms/LipidMatch_Workflow/LMQ/2018_05_08_LMQ_Software/LMQ_settings.csv")
-# args = c("/Users/JasonCochran/Documents/research/LipidMatch-Normalizer/LMQ_settings.csv")
-args = c("C:/Users/Jeremy/Desktop/Desktop/Instrumentation/Software/MSms/LipidMatch_Workflow/LipidMatch_Normalizer/2018_07_18_LMN_Software/LN_settings.csv")
+# args = c("C:/Users/Jeremy/Desktop/Desktop/Instrumentation/Software/MSms/LipidMatch_Workflow/LipidMatch_Normalizer/2018_07_18_LMN_Software/LN_settings.csv")
 
 numAdducts <- NULL
 numValues <- NULL

README.md

@@ -1,8 +1,14 @@
-# LipidMatch Quant
+# LipidMatch Normalizer
 
 Open source solution for quantification of lipids. Can be easily used with LipidMatch software.
 
-How to download LipidMatchQuant
+For detailed instructions on getting started:
+=========================================
+Please see the video tutorial for help: 
+See tutorial 10 in the following LipidMatch tutorial series: 
+https://www.youtube.com/playlist?list=PLZtU6nmcTb5mQWKYLJmULsfqNy9eCwy7K
+
+How to download LipidMatch Normalizer
 =========================================
 Want to download the latest version? Click "release" in the lower menu then click 'zip' to download the version you want!
 
@@ -17,5 +23,5 @@ Want to contribute to our project?
 Start by creating a Github profile! Then fork the Github project to your local computer. We recommend R Studio for coding but you can use anything you like. When you have completed the modifications, submit a pull request to the project and the developers will review it.
 
 
-Check out the UF SECIM webpage here: http://secim.ufl.edu/
+Check out the UF SECIM webpage here: http://secim.ufl.edu/secim-tools/
 =========================================