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Commit 2c0976f

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Muhammed Hasan Celik
committed
bug fix for passing metadata
1 parent 43d52bb commit 2c0976f

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-2
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.gitignore

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@@ -189,3 +189,4 @@ docs/wandb
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run_tutorial.s*
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logs/
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*.sbatch

src/decima/utils/dataframe.py

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@@ -44,7 +44,6 @@ def __enter__(self):
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return self
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def __exit__(self, exc_type, exc_val, exc_tb):
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# breakpoint()
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if self.writer is not None:
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if self.metadata is not None:
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self.writer.add_key_value_metadata({str(k): str(v) for k, v in self.metadata.items()})

src/decima/vep/attributions.py

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@@ -174,7 +174,7 @@ def variant_effect_attribution(
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dataset = VariantDataset(
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variants,
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metadata_anndata=metadata_anndata,
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metadata_anndata=result,
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gene_col=gene_col,
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distance_type=distance_type,
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min_distance=min_distance,

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