Merge branch 'main' into update-ledidi

Author: avantikalal

AUTHORS.md

@@ -7,3 +7,5 @@
 * Jayaram Kancherla <[email protected]>
 * Ketrin Gjoni <[email protected]>
 * M. Hasan Celik <[email protected]>
+* Carlo de Donno <[email protected]>
+* Johannes Hingerl <[email protected]>

src/grelu/design.py

@@ -136,6 +136,7 @@ def evolve(
             curr_output.loc[curr_best_idxs, "seq"] = convert_input_type(
                 torch.stack([ds[j] for j in curr_best_idxs]), "strings"
             )
+            curr_output = curr_output.loc[curr_best_idxs]
 
         # Concatenate outputs
         outputs = pd.concat([outputs, curr_output])

src/grelu/resources/__init__.py

@@ -28,7 +28,14 @@ def get_meme_file_path(meme_motif_db: str) -> str:
     Returns:
         Path to the specified MEME file.
     """
-    if meme_motif_db == "hocomoco_v12":
+    if meme_motif_db == "hocomoco_v13":
+        meme_motif_db = (
+            importlib_resources.files("grelu")
+            / "resources"
+            / "meme"
+            / "H13CORE_meme_format.meme"
+        )
+    elif meme_motif_db == "hocomoco_v12":
         meme_motif_db = (
             importlib_resources.files("grelu")
             / "resources"