@@ -10,12 +10,30 @@ profiles to find cells similar to a query cell state and allows researchers to
1010quickly and systematically leverage massive public scRNA-seq atlases to learn
1111about a cell state of interest.
1212
13+ Documentation
14+ --------------------------------------------------------------------------------
15+
1316Tutorials and API documentation can be found at:
1417https://genentech.github.io/scimilarity/index.html
1518
19+ Download
20+ --------------------------------------------------------------------------------
21+
1622Pretrained model weights, embeddings, kNN graphs, a single-cell metadata
1723can be downloaded from:
1824https://zenodo.org/records/10685499
1925
2026A docker container with SCimilarity preinstalled can be pulled from:
2127https://ghcr.io/genentech/scimilarity
28+
29+ Citation
30+ --------------------------------------------------------------------------------
31+
32+ To cite SCimilarity in publications please use:
33+
34+ **A cell atlas foundation model for scalable search of similar human cells. **
35+ *Graham Heimberg\* , Tony Kuo\* , Daryle J. DePianto, Tobias Heigl,
36+ Nathaniel Diamant, Omar Salem, Gabriele Scalia, Tommaso Biancalani,
37+ Jason R. Rock, Shannon J. Turley, Héctor Corrada Bravo, Josh Kaminker\*\* ,
38+ Jason A. Vander Heiden\*\* , Aviv Regev\*\* . *
39+ Nature (2024). https://doi.org/10.1038/s41586-024-08411-y
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