Merge branch 'main' into feature/direction_rose

Author: seisman

.github/workflows/benchmarks.yml

@@ -36,7 +36,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0

.github/workflows/cache_data.yaml

@@ -38,7 +38,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0

.github/workflows/check-links.yml

@@ -26,27 +26,28 @@ jobs:
 
     steps:
     - name: Checkout the repository
-      uses: actions/checkout@v4.2.2
+      uses: actions/checkout@v5.0.0
       with:
         path: repository
         persist-credentials: false
 
     - name: Checkout the documentation
-      uses: actions/checkout@v4.2.2
+      uses: actions/checkout@v5.0.0
       with:
         ref: gh-pages
         path: documentation
         persist-credentials: false
 
     - name: Link Checker
       id: lychee
-      uses: lycheeverse/lychee-action@82202e5e9c2f4ef1a55a3d02563e1cb6041e5332 # v2.4.1
+      uses: lycheeverse/lychee-action@5c4ee84814c983aa7164eaee476f014e53ff3963 # v2.5.0
       with:
         fail: false  # Don't fail action on broken links
         output: /tmp/lychee-out.md
+        # 200: OK
         # 429: Too many requests
         args: >
-          --accept 429
+          --accept 200,429
           --exclude "^https://docs.generic-mapping-tools.org/6.[0-9]?/%s$"
           --exclude "^https://docs.generic-mapping-tools.org/6.[0-9]?/%3Cmodule-name%3E.html$"
           --exclude "^https://doi.org"

.github/workflows/ci_docs.yml

@@ -71,7 +71,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0
@@ -168,7 +168,7 @@ jobs:
           REF_NAME: ${{ github.ref_name }}
 
       - name: Checkout the gh-pages branch
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           ref: gh-pages
           # Checkout to this folder instead of the current one

.github/workflows/ci_doctests.yaml

@@ -37,7 +37,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0

.github/workflows/ci_tests.yaml

@@ -104,7 +104,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0
@@ -151,7 +151,7 @@ jobs:
           GH_TOKEN: ${{ github.token }}
 
       - name: Install uv
-        uses: astral-sh/setup-uv@e92bafb6253dcd438e0484186d7669ea7a8ca1cc # v6.4.3
+        uses: astral-sh/setup-uv@d9e0f98d3fc6adb07d1e3d37f3043649ddad06a1 # v6.5.0
         with:
           activate-environment: true
           python-version: ${{ matrix.python-version }}

.github/workflows/ci_tests_dev.yaml

@@ -48,7 +48,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0
@@ -94,7 +94,7 @@ jobs:
 
       # Checkout current GMT repository
       - name: Checkout the GMT source from ${{ matrix.gmt_git_ref }} branch
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           repository: 'GenericMappingTools/gmt'
           ref: ${{ matrix.gmt_git_ref }}

.github/workflows/ci_tests_legacy.yaml

@@ -46,7 +46,7 @@ jobs:
     steps:
       # Checkout current git repository
       - name: Checkout
-        uses: actions/checkout@v4.2.2
+        uses: actions/checkout@v5.0.0
         with:
           # fetch all history so that setuptools-scm works
           fetch-depth: 0

.github/workflows/dvc-diff.yml

@@ -23,7 +23,7 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v4.2.2
+      uses: actions/checkout@v5.0.0
       with:
         # fetch all history so that dvc diff works
         fetch-depth: 0

.github/workflows/format-command.yml

@@ -23,7 +23,7 @@ jobs:
           private-key: ${{ secrets.APP_PRIVATE_KEY }}
 
       # Checkout the pull request branch
-      - uses: actions/checkout@v4.2.2
+      - uses: actions/checkout@v5.0.0
         with:
           token: ${{ steps.generate-token.outputs.token }}
           repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}