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When trying to run the system information command python -c "import pygmt; pygmt.show_versions()", I receive an AttributeError, specifically for pd.DataFrame.
File "/home/will/Desktop/repos/pygmt/pygmt/_typing.py", line 25, in <module>
TableLike = dict | np.ndarray | pd.DataFrame | xr.Dataset
^^^^^^^^^^^^
AttributeError: partially initialized module 'pandas' from '/envs/pygmt/lib/python3.14/site-packages/pandas/__init__.py' has no attribute 'DataFrame' (most likely due to a circular import)
Not sure why I would be receiving this. It looks like I have up-to-date pandas packages.
pandas 2.3.3
pandas-stubs 2.3.3.251219
pandocfilters 1.5.0
Minimal Complete Verifiable Example
python -c "import pygmt; pygmt.show_versions()"Full error message
Traceback (most recent call last):
File "<string>", line 1, in <module>
import pygmt; pygmt.show_versions()
^^^^^^^^^^^^
File "/home/will/Desktop/repos/pygmt/pygmt/__init__.py", line 24, in <module>
from pygmt import datasets
File "/home/will/Desktop/repos/pygmt/pygmt/datasets/__init__.py", line 7, in <module>
from pygmt.datasets.earth_age import load_earth_age
File "/home/will/Desktop/repos/pygmt/pygmt/datasets/earth_age.py", line 11, in <module>
import xarray as xr
File "/envs/pygmt/lib/python3.14/site-packages/xarray/__init__.py", line 3, in <module>
from xarray import coders, groupers, indexes, testing, tutorial, ufuncs
File "/envs/pygmt/lib/python3.14/site-packages/xarray/coders.py", line 6, in <module>
from xarray.coding.times import CFDatetimeCoder, CFTimedeltaCoder
File "/envs/pygmt/lib/python3.14/site-packages/xarray/coding/times.py", line 12, in <module>
import pandas as pd
File "/envs/pygmt/lib/python3.14/site-packages/pandas/__init__.py", line 49, in <module>
from pandas.core.api import (
...<62 lines>...
)
File "/envs/pygmt/lib/python3.14/site-packages/pandas/core/api.py", line 1, in <module>
from pandas._libs import (
...<4 lines>...
)
File "/envs/pygmt/lib/python3.14/site-packages/pandas/_libs/__init__.py", line 18, in <module>
from pandas._libs.interval import Interval
File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval
File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable
File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing
File "/envs/pygmt/lib/python3.14/site-packages/pandas/_libs/tslibs/__init__.py", line 40, in <module>
from pandas._libs.tslibs.conversion import localize_pydatetime
File "pandas/_libs/tslibs/conversion.pyx", line 1, in init pandas._libs.tslibs.conversion
File "pandas/_libs/tslibs/offsets.pyx", line 1, in init pandas._libs.tslibs.offsets
File "pandas/_libs/tslibs/timestamps.pyx", line 1, in init pandas._libs.tslibs.timestamps
File "pandas/_libs/tslibs/timedeltas.pyx", line 86, in init pandas._libs.tslibs.timedeltas
File "pandas/_libs/tslibs/fields.pyx", line 25, in init pandas._libs.tslibs.fields
File "/envs/pygmt/lib/python3.14/site-packages/pandas/_config/localization.py", line 12, in <module>
import subprocess
File "/envs/pygmt/lib/python3.14/subprocess.py", line 124, in <module>
import select
File "/home/will/Desktop/repos/pygmt/pygmt/src/select.py", line 10, in <module>
from pygmt._typing import PathLike, TableLike
File "/home/will/Desktop/repos/pygmt/pygmt/_typing.py", line 25, in <module>
TableLike = dict | np.ndarray | pd.DataFrame | xr.Dataset
^^^^^^^^^^^^
AttributeError: partially initialized module 'pandas' from '/envs/pygmt/lib/python3.14/site-packages/pandas/__init__.py' has no attribute 'DataFrame' (most likely due to a circular import)System information
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bugSomething isn't workingSomething isn't workingwontfixThis will not be worked onThis will not be worked on