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fix casing in function params
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src/anyvlm/functions/get_caf.py

Lines changed: 10 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -6,16 +6,21 @@
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def get_caf(
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anyvar_client: BaseAnyVarClient, assembly_id: str, referenceName: str, start: int, referenceBases: str, alternateBases: str
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anyvar_client: BaseAnyVarClient,
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assembly_id: str,
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reference_name: str,
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start: int,
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reference_bases: str,
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alternate_bases: str,
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) -> list[CohortAlleleFrequencyStudyResult]:
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"""Retrieve Cohort Allele Frequency data for all known variants matching provided search params
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:param anyvar_client: AnyVar client
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:param assembly_id: The reference assembly to utilize - must be one of: "GRCh37", "GRCh38", "hg38", "hg19"
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:param referenceName: The chromosome to search on, with an optional "chr" prefix - e.g., "1", "chr22", "X", "chrY", etc.
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:param reference_name: The chromosome to search on, with an optional "chr" prefix - e.g., "1", "chr22", "X", "chrY", etc.
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:param start: start of range search
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:param referenceBases: Genomic bases ('T', 'AC', etc.)
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:param alternateBases: Genomic bases ('T', 'AC', etc.)
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:param reference_bases: Genomic bases ('T', 'AC', etc.)
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:param alternate_bases: Genomic bases ('T', 'AC', etc.)
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:return: list of CAFs contained in search interval
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"""
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raise NotImplementedError #TODO: Implement this. See Issue #16.
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raise NotImplementedError # TODO: Implement this. See Issue #16.

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