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6 | 6 |
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7 | 7 |
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8 | 8 | def get_caf( |
9 | | - anyvar_client: BaseAnyVarClient, assembly_id: str, referenceName: str, start: int, referenceBases: str, alternateBases: str |
| 9 | + anyvar_client: BaseAnyVarClient, |
| 10 | + assembly_id: str, |
| 11 | + reference_name: str, |
| 12 | + start: int, |
| 13 | + reference_bases: str, |
| 14 | + alternate_bases: str, |
10 | 15 | ) -> list[CohortAlleleFrequencyStudyResult]: |
11 | 16 | """Retrieve Cohort Allele Frequency data for all known variants matching provided search params |
12 | 17 |
|
13 | 18 | :param anyvar_client: AnyVar client |
14 | 19 | :param assembly_id: The reference assembly to utilize - must be one of: "GRCh37", "GRCh38", "hg38", "hg19" |
15 | | - :param referenceName: The chromosome to search on, with an optional "chr" prefix - e.g., "1", "chr22", "X", "chrY", etc. |
| 20 | + :param reference_name: The chromosome to search on, with an optional "chr" prefix - e.g., "1", "chr22", "X", "chrY", etc. |
16 | 21 | :param start: start of range search |
17 | | - :param referenceBases: Genomic bases ('T', 'AC', etc.) |
18 | | - :param alternateBases: Genomic bases ('T', 'AC', etc.) |
| 22 | + :param reference_bases: Genomic bases ('T', 'AC', etc.) |
| 23 | + :param alternate_bases: Genomic bases ('T', 'AC', etc.) |
19 | 24 | :return: list of CAFs contained in search interval |
20 | 25 | """ |
21 | | - raise NotImplementedError #TODO: Implement this. See Issue #16. |
| 26 | + raise NotImplementedError # TODO: Implement this. See Issue #16. |
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