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‎tests/unit/anyvar/cassettes/test_http_client/test_put_allele_expressions.yaml‎

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@@ -857,4 +857,82 @@ interactions:
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "7-140753336-A-T", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.Otc5ovrw906Ack087o1fhegB4jDRqCAe","type":"Allele","digest":"Otc5ovrw906Ack087o1fhegB4jDRqCAe","location":{"id":"ga4gh:SL.nhul5x5P_fKjGEpY9PEkMIekJfZaKom2","type":"SequenceLocation","digest":"nhul5x5P_fKjGEpY9PEkMIekJfZaKom2","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul"},"start":140753335,"end":140753336},"state":{"type":"LiteralSequenceExpression","sequence":"T"}},"object_id":"ga4gh:VA.Otc5ovrw906Ack087o1fhegB4jDRqCAe"}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "Y-2781704-G-G", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.ruQCmfXJrEylHmOQF-1PG6bLwQesDU2g","type":"Allele","digest":"ruQCmfXJrEylHmOQF-1PG6bLwQesDU2g","location":{"id":"ga4gh:SL.JqeJ3V-75edWj03xbzw1gtSw3qPQVV2D","type":"SequenceLocation","digest":"JqeJ3V-75edWj03xbzw1gtSw3qPQVV2D","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781703,"end":2781704},"state":{"type":"LiteralSequenceExpression","sequence":"G"}},"object_id":"ga4gh:VA.ruQCmfXJrEylHmOQF-1PG6bLwQesDU2g"}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "Y-2781761-C-C", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk","type":"Allele","digest":"xbX035HgURWIUAjn6x3cS26jafP8Q_bk","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"C"}},"object_id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk"}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "Y-2781761-C-C", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk","type":"Allele","digest":"xbX035HgURWIUAjn6x3cS26jafP8Q_bk","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"C"}},"object_id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk"}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "Y-2781761-C-A", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","type":"Allele","digest":"9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"A"}},"object_id":"ga4gh:VA.9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD"}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: '{"definition": "Y-2781761-CA-C", "assembly_name": "GRCh38", "input_type":
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"Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"messages":[],"object":{"id":"ga4gh:VA.yi7A2l0uIUMaInQaJnHU_B2Cf_OuZRJg","type":"Allele","digest":"yi7A2l0uIUMaInQaJnHU_B2Cf_OuZRJg","location":{"id":"ga4gh:SL.JsFGLKlUDocinf7oWTXAvVT2WOso7R9u","type":"SequenceLocation","digest":"JsFGLKlUDocinf7oWTXAvVT2WOso7R9u","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781761,"end":2781785},"state":{"type":"ReferenceLengthExpression","length":23,"sequence":"AAAAAAAAAAAAAAAAAAAAAAA","repeatSubunitLength":1}},"object_id":"ga4gh:VA.yi7A2l0uIUMaInQaJnHU_B2Cf_OuZRJg"}'
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headers: {}
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status:
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code: 200
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message: OK
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_put_allele_expressions_invalid_assembly.yaml‎

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status:
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code: 422
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message: Unprocessable Entity
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- request:
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body: '{"definition": "Y", "assembly_name": "GRCh30000", "input_type": "Allele"}'
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headers: {}
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method: PUT
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uri: http://localhost:8000/variation
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response:
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body:
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string: '{"detail":[{"type":"enum","loc":["body","assembly_name"],"msg":"Input
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should be ''GRCh37'' or ''GRCh38''","input":"GRCh30000","ctx":{"expected":"''GRCh37''
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or ''GRCh38''"}}]}'
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headers: {}
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status:
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code: 422
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message: Unprocessable Entity
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_search_by_interval.yaml‎

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status:
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code: 200
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message: OK
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5&start=2781760&end=2781760
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response:
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body:
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string: '{"variations":[{"id":"ga4gh:VA.9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","type":"Allele","digest":"9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"A"}},{"id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk","type":"Allele","digest":"xbX035HgURWIUAjn6x3cS26jafP8Q_bk","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"C"}}]}'
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headers: {}
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status:
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code: 200
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message: OK
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5&start=2781760&end=2781768
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response:
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body:
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string: '{"variations":[{"id":"ga4gh:VA.9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","type":"Allele","digest":"9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"A"}},{"id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk","type":"Allele","digest":"xbX035HgURWIUAjn6x3cS26jafP8Q_bk","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"C"}},{"id":"ga4gh:VA.yi7A2l0uIUMaInQaJnHU_B2Cf_OuZRJg","type":"Allele","digest":"yi7A2l0uIUMaInQaJnHU_B2Cf_OuZRJg","location":{"id":"ga4gh:SL.JsFGLKlUDocinf7oWTXAvVT2WOso7R9u","type":"SequenceLocation","digest":"JsFGLKlUDocinf7oWTXAvVT2WOso7R9u","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781761,"end":2781785},"state":{"type":"ReferenceLengthExpression","length":23,"sequence":"AAAAAAAAAAAAAAAAAAAAAAA","repeatSubunitLength":1}}]}'
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headers: {}
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status:
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code: 200
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message: OK
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_search_by_interval_not_found.yaml‎

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status:
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code: 200
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message: OK
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5&start=1&end=100
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response:
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body:
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string: '{"variations":[]}'
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headers: {}
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status:
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code: 200
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message: OK
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_search_by_interval_unknown_accession.yaml‎

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status:
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code: 200
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message: OK
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=ga4gh:SQ.ZZZZZu1aycC0tPQPFmUaGXJLDs5SbPZ5&start=2781760&end=2781768
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response:
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body:
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string: '{"variations":[]}'
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headers: {}
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status:
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code: 200
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message: OK
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_search_by_interval_unknown_alias.yaml‎

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status:
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code: 404
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message: Not Found
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=GRCh45.p1:Y&start=2781760&end=2781760
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response:
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body:
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string: '{"detail":"Unable to dereference provided accession ID"}'
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headers: {}
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status:
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code: 404
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message: Not Found
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version: 1

‎tests/unit/anyvar/cassettes/test_http_client/test_search_by_interval_with_alias.yaml‎

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status:
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code: 200
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message: OK
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- request:
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body: null
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headers: {}
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method: GET
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uri: http://localhost:8000/search?accession=GRCh38.p1:Y&start=2781760&end=2781760
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response:
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body:
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string: '{"variations":[{"id":"ga4gh:VA.9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","type":"Allele","digest":"9VDxL0stMBOZwcTKw3yb3UoWQkpaI9OD","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"A"}},{"id":"ga4gh:VA.xbX035HgURWIUAjn6x3cS26jafP8Q_bk","type":"Allele","digest":"xbX035HgURWIUAjn6x3cS26jafP8Q_bk","location":{"id":"ga4gh:SL.sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","type":"SequenceLocation","digest":"sYiBcbbgF-1CANNCTfQ6zwZOU0iHhymR","sequenceReference":{"type":"SequenceReference","refgetAccession":"SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5"},"start":2781760,"end":2781761},"state":{"type":"LiteralSequenceExpression","sequence":"C"}}]}'
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headers: {}
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status:
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code: 200
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message: OK
146158
version: 1

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