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| 1 | +"""Test schema validation functionality""" |
| 2 | + |
| 3 | +import pytest |
| 4 | + |
| 5 | +from anyvlm.schemas.vlm import ( |
| 6 | + RESULT_ENTITY_TYPE, |
| 7 | + HandoverType, |
| 8 | + ResponseField, |
| 9 | + ResponseSummary, |
| 10 | + ResultSet, |
| 11 | + VlmResponse, |
| 12 | +) |
| 13 | +from anyvlm.utils.types import Zygosity |
| 14 | + |
| 15 | + |
| 16 | +@pytest.fixture(scope="module") |
| 17 | +def valid_handover_id() -> str: |
| 18 | + return HandoverType().id |
| 19 | + |
| 20 | + |
| 21 | +@pytest.fixture(scope="module") |
| 22 | +def response_summary() -> ResponseSummary: |
| 23 | + return ResponseSummary(exists=False, numTotalResults=0) |
| 24 | + |
| 25 | + |
| 26 | +@pytest.fixture(scope="module") |
| 27 | +def responses_with_invalid_resultset_ids(valid_handover_id) -> list[ResponseField]: |
| 28 | + return [ |
| 29 | + ResponseField( |
| 30 | + resultSets=[ |
| 31 | + ResultSet( |
| 32 | + exists=True, |
| 33 | + id=f"invalid_handover_id {Zygosity.HOMOZYGOUS}", |
| 34 | + resultsCount=0, |
| 35 | + setType=RESULT_ENTITY_TYPE, |
| 36 | + ) |
| 37 | + ] |
| 38 | + ), |
| 39 | + ResponseField( |
| 40 | + resultSets=[ |
| 41 | + ResultSet( |
| 42 | + exists=True, |
| 43 | + id=f"{valid_handover_id} invalid_zygosity", |
| 44 | + resultsCount=0, |
| 45 | + setType=RESULT_ENTITY_TYPE, |
| 46 | + ) |
| 47 | + ] |
| 48 | + ), |
| 49 | + ResponseField( |
| 50 | + resultSets=[ |
| 51 | + ResultSet( |
| 52 | + exists=True, |
| 53 | + id=f"{Zygosity.HOMOZYGOUS}-{valid_handover_id}", # incorrect order/formatting |
| 54 | + resultsCount=0, |
| 55 | + setType=RESULT_ENTITY_TYPE, |
| 56 | + ) |
| 57 | + ] |
| 58 | + ), |
| 59 | + ] |
| 60 | + |
| 61 | + |
| 62 | +def test_valid_resultset_id(response_summary, valid_handover_id): |
| 63 | + response = ResponseField( |
| 64 | + resultSets=[ |
| 65 | + ResultSet( |
| 66 | + exists=True, |
| 67 | + id=f"{valid_handover_id} {Zygosity.HOMOZYGOUS}", |
| 68 | + resultsCount=0, |
| 69 | + setType=RESULT_ENTITY_TYPE, |
| 70 | + ) |
| 71 | + ] |
| 72 | + ) |
| 73 | + |
| 74 | + # Should NOT raise an error |
| 75 | + vlm_response = VlmResponse(responseSummary=response_summary, response=response) |
| 76 | + |
| 77 | + assert ( |
| 78 | + vlm_response.response.resultSets[0].id |
| 79 | + == f"{valid_handover_id} {Zygosity.HOMOZYGOUS}" |
| 80 | + ) |
| 81 | + |
| 82 | + |
| 83 | +def test_invalid_resultset_ids(response_summary, responses_with_invalid_resultset_ids): |
| 84 | + for response in responses_with_invalid_resultset_ids: |
| 85 | + with pytest.raises( |
| 86 | + ValueError, |
| 87 | + match=r"^Invalid ResultSet id - ids must be in form '<node_id> <zygosity>'", |
| 88 | + ): |
| 89 | + VlmResponse(responseSummary=response_summary, response=response) |
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