add support for gap character in NucleotideSequence type

jennifer-bowser · jennifer-bowser · commit 8ac5e44b434f · 2025-12-12T15:56:06.000-05:00
diff --git a/src/anyvlm/utils/types.py b/src/anyvlm/utils/types.py
@@ -30,7 +30,7 @@ class UcscAssemblyBuild(StrEnum):
 NucleotideSequence = Annotated[
     str,
     BeforeValidator(str.upper),
-    StringConstraints(pattern=r"^[ACGTURYKMSWBDHVN]*$"),
+    StringConstraints(pattern=r"^[ACGTURYKMSWBDHVN.-]*$"),
 ]
 
 

Original file line number	Diff line number	Diff line change
`@@ -30,7 +30,7 @@ class UcscAssemblyBuild(StrEnum):`
`30`	`30`	`NucleotideSequence = Annotated[`
`31`	`31`	`str,`
`32`	`32`	`BeforeValidator(str.upper),`
`33`		`- StringConstraints(pattern=r"^[ACGTURYKMSWBDHVN]*$"),`
	`33`	`+ StringConstraints(pattern=r"^[ACGTURYKMSWBDHVN.-]*$"),`
`34`	`34`	`]`
`35`	`35`
`36`	`36`