|
56 | 56 | ##INFO=<ID=VRS_Ends,Number=R,Type=String,Description="Interresidue coordinates used as the location ends for the GA4GH VRS Alleles corresponding to the GT indexes of the REF and ALT alleles"> |
57 | 57 | ##INFO=<ID=VRS_States,Number=R,Type=String,Description="The literal sequence states used for the GA4GH VRS Alleles corresponding to the GT indexes of the REF and ALT alleles"> |
58 | 58 | #CHROM POS ID REF ALT QUAL FILTER INFO |
59 | | -chr14 19000005 . C A . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000278707;AN=3588;AS_QUALapprox=0|55;CALIBRATION_SENSITIVITY=.;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs1294420531||||||||OR11H12||||||||3.503|0.321010||||||||||||||;F_MISSING=0.23692;QUALapprox=55;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.8OSPHYmhyg9hJTpFQ8aNcmLgYMR77ZyJ,ga4gh:VA.slgr2fnRKaUnQrJZvYNDGMrfZHw6QCr6;VRS_Starts=18223528,18223528;VRS_Ends=18223529,18223529;VRS_States=C,A |
60 | | -chr14 19000033 . C T . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.000449236;AN=4452;AS_QUALapprox=0|118;CALIBRATION_SENSITIVITY=0.9951;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs201056409||||||||OR11H12||||||||4.169|0.380250||||||||||||||;F_MISSING=0.0531689;QUALapprox=62;SCORE=-0.6499;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.W2CUxon4uJMb3B7txw-Ok4Kc7L6Y6_U6,ga4gh:VA.6Vh1yfYyljQHm6_qLTKqzi1URy8MfcGe;VRS_Starts=18223556,18223556;VRS_Ends=18223557,18223557;VRS_States=C,T |
61 | | -chr14 19000059 . C G . ExcessHet AC=1268;AC_Hemi=0;AC_Het=1262;AC_Hom=6;AF=0.3916;AN=3238;AS_QUALapprox=0|83543;CALIBRATION_SENSITIVITY=.;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||rs28973059||||||||OR11H12||0.3067||||||3.687|0.337395||||||||||||||;F_MISSING=0.311357;QUALapprox=67;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.J2UbTk_frk4EJ884PUZ3q0jyhOhmO6Nb,ga4gh:VA.7RhOJ6GlTAnbiwEcfvl9ZKSzrJl47Emg;VRS_Starts=18223582,18223582;VRS_Ends=18223583,18223583;VRS_States=C,G |
62 | | -chr14 18223586 . T C . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000214041;AN=4672;AS_QUALapprox=0|50;CALIBRATION_SENSITIVITY=.;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||rs987931840||||||||OR11H12||||||||5.409|0.494757||||||||||||||;F_MISSING=0.00638026;QUALapprox=50;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.mp2_nBqnYfP1qh9lVEcstg1ZihTojgJF,ga4gh:VA.srLXVmS7-JU1hLfxMZkkgFMy64GS7D8H;VRS_Starts=18223585,18223585;VRS_Ends=18223586,18223586;VRS_States=T,C |
63 | | -chr14 18223591 . G A . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.0004329;AN=4620;AS_QUALapprox=0|112;CALIBRATION_SENSITIVITY=0.9968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs913251146||||||||OR11H12||||||||3.844|0.351386||||||||||||||;F_MISSING=0.0174394;QUALapprox=65;SCORE=-0.6961;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.TyLqDjEF7ZqV8OuoIvbbqSlobvRN08j4,ga4gh:VA.1ra1LoRvuvAhbeKl4YgbdrGkXWjc8Lpc;VRS_Starts=18223590,18223590;VRS_Ends=18223591,18223591;VRS_States=G,A |
64 | | -chr14 18223619 . G A . . AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000214133;AN=4670;AS_QUALapprox=0|70;CALIBRATION_SENSITIVITY=0.991;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs532880059||||||||OR11H12||||||||4.296|0.391602||||||||||||||;F_MISSING=0.00680561;QUALapprox=70;SCORE=-0.5695;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.Vhl_snU0aXt19dt489glUvO0PST_0wRk,ga4gh:VA.pJSWmaP-F6h3wjCGI_4yabfBimi_sjA-;VRS_Starts=18223618,18223618;VRS_Ends=18223619,18223619;VRS_States=G,A |
65 | | -chr14 18223631 . T C . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.000426985;AN=4684;AS_QUALapprox=0|93;CALIBRATION_SENSITIVITY=0.9931;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||rs1014016126||||||||OR11H12||||||||5.744|0.527593||||||||||||||;F_MISSING=0.00382816;QUALapprox=55;SCORE=-0.6068;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.FHtteSI82g2J0S4SJ-OlJf9Z7VTIGbbR,ga4gh:VA.oM-HQuKXd2dD-pF-GnSLjbvRGPn0kVoe;VRS_Starts=18223630,18223630;VRS_Ends=18223631,18223631;VRS_States=T,C |
66 | | -chr14 18223638 . T G . . AC=4;AC_Hemi=0;AC_Het=4;AC_Hom=0;AF=0.000859845;AN=4652;AS_QUALapprox=0|231;CALIBRATION_SENSITIVITY=0.9945;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||rs569534039||||||||OR11H12||0.0024||||||5.508|0.504341||||||||||||||;F_MISSING=0.0106338;QUALapprox=64;SCORE=-0.6368;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.KrXdgsjb8NOp8K0YSKCq5nah_b3_fqiX,ga4gh:VA.D6ER6alwYKPWe_8eQO5N15BZdqXHCT9D;VRS_Starts=18223637,18223637;VRS_Ends=18223638,18223638;VRS_States=T,G |
67 | | -chr14 18223644 . G T . . AC=19;AC_Hemi=0;AC_Het=19;AC_Hom=0;AF=0.00405809;AN=4682;AS_QUALapprox=0|1089;CALIBRATION_SENSITIVITY=0.9937;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs1016546371||||||||OR11H12||||||||3.785|0.346182||||||||||||||;F_MISSING=0.00425351;QUALapprox=56;SCORE=-0.62;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA._9meXYg_vU3HetGTMANgvwrZKbocQEgQ,ga4gh:VA.nKKZQhf3-Fq-wdSihMJ6aDo4BLaL9lWb;VRS_Starts=18223643,18223643;VRS_Ends=18223644,18223644;VRS_States=G,T |
68 | | -chr14 18223645 . G T . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000213767;AN=4678;AS_QUALapprox=0|53;CALIBRATION_SENSITIVITY=.;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs1244872946||||||||OR11H12||||||||3.733|0.341555||||||||||||||;F_MISSING=0.00510421;QUALapprox=53;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA._Xpr4n6WQ2PJETuGQe2tsnKa9ZoBSyb-,ga4gh:VA.j3bdlz2W_udb5DnBnoNkSMoEbhrE9hcl;VRS_Starts=18223644,18223644;VRS_Ends=18223645,18223645;VRS_States=G,T |
| 59 | +chr14 19000006 . C A . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000278707;AN=3588;AS_QUALapprox=0|55;CALIBRATION_SENSITIVITY=.;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs1294420531||||||||OR11H12||||||||3.503|0.321010||||||||||||||;F_MISSING=0.23692;QUALapprox=55;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.8OSPHYmhyg9hJTpFQ8aNcmLgYMR77ZyJ,ga4gh:VA.slgr2fnRKaUnQrJZvYNDGMrfZHw6QCr6;VRS_Starts=18223528,18223528;VRS_Ends=18223529,18223529;VRS_States=C,A |
| 60 | +chr14 19000034 . C T . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.000449236;AN=4452;AS_QUALapprox=0|118;CALIBRATION_SENSITIVITY=0.9951;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs201056409||||||||OR11H12||||||||4.169|0.380250||||||||||||||;F_MISSING=0.0531689;QUALapprox=62;SCORE=-0.6499;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.W2CUxon4uJMb3B7txw-Ok4Kc7L6Y6_U6,ga4gh:VA.6Vh1yfYyljQHm6_qLTKqzi1URy8MfcGe;VRS_Starts=18223556,18223556;VRS_Ends=18223557,18223557;VRS_States=C,T |
| 61 | +chr14 19000060 . C G . ExcessHet AC=1268;AC_Hemi=0;AC_Het=1262;AC_Hom=6;AF=0.3916;AN=3238;AS_QUALapprox=0|83543;CALIBRATION_SENSITIVITY=.;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||rs28973059||||||||OR11H12||0.3067||||||3.687|0.337395||||||||||||||;F_MISSING=0.311357;QUALapprox=67;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.J2UbTk_frk4EJ884PUZ3q0jyhOhmO6Nb,ga4gh:VA.7RhOJ6GlTAnbiwEcfvl9ZKSzrJl47Emg;VRS_Starts=18223582,18223582;VRS_Ends=18223583,18223583;VRS_States=C,G |
| 62 | +chr14 19000063 . T C . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000214041;AN=4672;AS_QUALapprox=0|50;CALIBRATION_SENSITIVITY=.;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||rs987931840||||||||OR11H12||||||||5.409|0.494757||||||||||||||;F_MISSING=0.00638026;QUALapprox=50;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.mp2_nBqnYfP1qh9lVEcstg1ZihTojgJF,ga4gh:VA.srLXVmS7-JU1hLfxMZkkgFMy64GS7D8H;VRS_Starts=18223585,18223585;VRS_Ends=18223586,18223586;VRS_States=T,C |
| 63 | +chr14 19000068 . G A . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.0004329;AN=4620;AS_QUALapprox=0|112;CALIBRATION_SENSITIVITY=0.9968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs913251146||||||||OR11H12||||||||3.844|0.351386||||||||||||||;F_MISSING=0.0174394;QUALapprox=65;SCORE=-0.6961;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.TyLqDjEF7ZqV8OuoIvbbqSlobvRN08j4,ga4gh:VA.1ra1LoRvuvAhbeKl4YgbdrGkXWjc8Lpc;VRS_Starts=18223590,18223590;VRS_Ends=18223591,18223591;VRS_States=G,A |
| 64 | +chr14 19000096 . G A . . AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000214133;AN=4670;AS_QUALapprox=0|70;CALIBRATION_SENSITIVITY=0.991;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||rs532880059||||||||OR11H12||||||||4.296|0.391602||||||||||||||;F_MISSING=0.00680561;QUALapprox=70;SCORE=-0.5695;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.Vhl_snU0aXt19dt489glUvO0PST_0wRk,ga4gh:VA.pJSWmaP-F6h3wjCGI_4yabfBimi_sjA-;VRS_Starts=18223618,18223618;VRS_Ends=18223619,18223619;VRS_States=G,A |
| 65 | +chr14 19000108 . T C . . AC=2;AC_Hemi=0;AC_Het=2;AC_Hom=0;AF=0.000426985;AN=4684;AS_QUALapprox=0|93;CALIBRATION_SENSITIVITY=0.9931;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||rs1014016126||||||||OR11H12||||||||5.744|0.527593||||||||||||||;F_MISSING=0.00382816;QUALapprox=55;SCORE=-0.6068;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.FHtteSI82g2J0S4SJ-OlJf9Z7VTIGbbR,ga4gh:VA.oM-HQuKXd2dD-pF-GnSLjbvRGPn0kVoe;VRS_Starts=18223630,18223630;VRS_Ends=18223631,18223631;VRS_States=T,C |
| 66 | +chr14 19000115 . T G . . AC=4;AC_Hemi=0;AC_Het=4;AC_Hom=0;AF=0.000859845;AN=4652;AS_QUALapprox=0|231;CALIBRATION_SENSITIVITY=0.9945;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||rs569534039||||||||OR11H12||0.0024||||||5.508|0.504341||||||||||||||;F_MISSING=0.0106338;QUALapprox=64;SCORE=-0.6368;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA.KrXdgsjb8NOp8K0YSKCq5nah_b3_fqiX,ga4gh:VA.D6ER6alwYKPWe_8eQO5N15BZdqXHCT9D;VRS_Starts=18223637,18223637;VRS_Ends=18223638,18223638;VRS_States=T,G |
| 67 | +chr14 19000121 . G T . . AC=19;AC_Hemi=0;AC_Het=19;AC_Hom=0;AF=0.00405809;AN=4682;AS_QUALapprox=0|1089;CALIBRATION_SENSITIVITY=0.9937;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs1016546371||||||||OR11H12||||||||3.785|0.346182||||||||||||||;F_MISSING=0.00425351;QUALapprox=56;SCORE=-0.62;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA._9meXYg_vU3HetGTMANgvwrZKbocQEgQ,ga4gh:VA.nKKZQhf3-Fq-wdSihMJ6aDo4BLaL9lWb;VRS_Starts=18223643,18223643;VRS_Ends=18223644,18223644;VRS_States=G,T |
| 68 | +chr14 19000122 . G T . LowQual;NO_HQ_GENOTYPES AC=1;AC_Hemi=0;AC_Het=1;AC_Hom=0;AF=0.000213767;AN=4678;AS_QUALapprox=0|53;CALIBRATION_SENSITIVITY=.;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||rs1244872946||||||||OR11H12||||||||3.733|0.341555||||||||||||||;F_MISSING=0.00510421;QUALapprox=53;SCORE=.;TYPE=SNP;VRS_Allele_IDs=ga4gh:VA._Xpr4n6WQ2PJETuGQe2tsnKa9ZoBSyb-,ga4gh:VA.j3bdlz2W_udb5DnBnoNkSMoEbhrE9hcl;VRS_Starts=18223644,18223644;VRS_Ends=18223645,18223645;VRS_States=G,T |
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