File tree Expand file tree Collapse file tree 1 file changed +54
-0
lines changed
src/biocommons/gks-conversion-tool Expand file tree Collapse file tree 1 file changed +54
-0
lines changed Original file line number Diff line number Diff line change @@ -83,6 +83,60 @@ def convert_gks_to_hl7_v2(statement: Statement) -> dict[str, Any]:
8383 # 511 - Allele start/end
8484 allele_start , allele_end = _get_location_interval (genomic_location )
8585
86+ # 513 - DNA Region
87+
88+ # 514 - Gene Studied
89+
90+ # 516 - Transcript Reference Sequence ID
91+
92+ # 518 - DNA Change
93+
94+ # 520 - Amino Acid Change
95+
96+ # 521 - Molecular Consequence
97+
98+ # 522 - Protein Reference Sequence
99+
100+ # 524 - Genomic Reference Sequence ID
101+
102+ # 526 - Reference Allele
103+
104+ # 527 - Observed Allele
105+
106+ # 528 - Genomic DNA Change
107+
108+ # 532 - Cytogenetic Location
109+
110+ # 534 - Penetrance
111+
112+ # 535 - Genetic Variant Source
113+
114+ # 545 - Allele Length
115+
116+ # 546 - Structural Inner Start/End
117+
118+ # 547 - Structural Outer Start/End
119+
120+ # 550 - Copy Number
121+
122+ # 553 - Variant Classification
123+
124+ # 554 - Interpretation
125+
126+ # 560 - Mode of Inheritance
127+
128+ # 561 - Functional Effect
129+
130+ # 564 - Repeat Nucleotides
131+
132+ # 565 - Repeat Number
133+
134+ # 572 - Affected Exon Start/End
135+
136+ # 573 - Affected Intron Start/End
137+
138+ # 575 - Interpretation Note
139+
86140 result : dict [str , Any ] = {}
87141 result [HL7V2 ["VARIANT_NAME" ]] = variant_name
88142 result [HL7V2 ["CHROMOSOME" ]] = chromosome
You can’t perform that action at this time.
0 commit comments