Nextflow error specifying revision

[ghowitt]

Hello,

I've just tried to run bambu-singlecell-spatial and got an error that the revision needs to be specified. This is the code I used to run:

nextflow run GoekeLab/bambu-singlecell-spatial \
  --reads /PATH/all_runs.fq \
  --genome /PATH/Mus_musculus.GRCm38.dna.toplevel.fa \
  --annotation /PATH/Mus_musculus.GRCm38.90.gtf \
  --chemistry 10x5v2 \
  --ncore 10 --outdir . \
  -with-singularity lingminhao/bambusc:beta1.2

And this is the output:

Pulling GoekeLab/bambu-singlecell-spatial ...
 downloaded from https://github.com/GoekeLab/bambu-singlecell-spatial.git
Project `GoekeLab/bambu-singlecell-spatial` is currently stickied on revision: main -- you need to explicitly specify a revision with the option `-r` in order to use it
(base) [ghowitt@papr-rcf-compute201 bambu_sc]$

Can you advise what I should put into that argument?

Cheers

[lingminhao]

Hello,

you can run the nextflow by using nextflow run -r main GoekeLab/bambu-singlecell-spatial followed by the rest of your argument.

Best,
Min Hao