Merge remote-tracking branch 'upstream/devel' into devel

Author: cying111

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: bambu
 Type: Package
 Title: Context-Aware Transcript Quantification from Long Read RNA-Seq data
-Version: 3.5.1
+Version: 3.9.0
 Authors@R: c(person("Ying", "Chen", role = c("cre","aut"),
              email = "[email protected]"),
              person("Andre", "Sim", role = "aut",