Request: Provide a container

[andreas-wilm]

Daer authors,

Thanks for making Bambu available! There seem to be a number of installation or package dependency issues currently (e.g. #380). To avoid this, would it be possible to provider a Docker or Singularity container?

Many thanks,
Andreas

[jonathangoeke]

Hi @andreas-wilm
You could try the biocontainer version https://biocontainers.pro/tools/bioconductor-bambu
There is also the nf-core pipeline nanoseq that uses bambu: https://nf-co.re/nanoseq/3.1.0, but I'm not sure right now which version of Bambu is used there
Thanks!
Jonathan

[andreas-wilm]

Excellent! Thank you @jonathangoeke. This is definitely worthwhile adding to the README!