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I have a problem plotting my bambu results
I have five samples I want to plot using the plotBambu function.
this is my data:
> se
class: RangedSummarizedExperiment
dim: 288719 5
metadata(2): incompatibleCounts warnings
assays(4): counts CPM fullLengthCounts uniqueCounts
rownames(288719): BambuTx1 BambuTx2 ... ENSMUST00020183812 ENSMUST00020183813
rowData names(11): TXNAME GENEID ... txid eqClassById
colnames(5): 91b28ef9-e037-4bdd-b4e5-56286eddf268_SMART-Seq_barcode10_restranded_k14
91b28ef9-e037-4bdd-b4e5-56286eddf268_SMART-Seq_barcode11_restranded_k14
91b28ef9-e037-4bdd-b4e5-56286eddf268_SMART-Seq_barcode13_restranded_k14
91b28ef9-e037-4bdd-b4e5-56286eddf268_SMART-Seq_barcode14_restranded_k14
91b28ef9-e037-4bdd-b4e5-56286eddf268_SMART-Seq_barcode15_restranded_k14
colData names(1): name
But when I try to plot it I get this error:
plotBambu(se, type = "annotation", gene_id = "ENSMUSG00000025915")
Error in validObject(.Object) :
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
any ideas what I can do to fix it?
thanks
Assa
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