Finishes readme, modifies input file

Author: lukas ho-koziol

toil/README.md

@@ -48,9 +48,9 @@ Docker isn't a necessity however we offer the option of using docker to increase
 # Python
 
 1. Install the files under `toil/python` locally
-    - `example.py` is both workflow specification and input
+    - `draft.py` is both workflow specification and input, modify for desired file paths
 2. Run the pipeline with the following command:
-    `python example.py file:my-job-store`
+    `python3 draft.py file:my-job-store`
 
 
 ## Notes and Contribution

toil/cwl/cwl_input.yaml

@@ -3,12 +3,12 @@ quant: quant
 libtype: A
 fqOne: 
   class: File
-  location: /home/luk/Desktop/bioinformatics-workflows/test_data/reads_1.fq.gz
+  location: path/to/reads_1.fq.gz
   format: http://edamontology.org/format_1930
 fqTwo: 
   class: File
-  location: /home/luk/Desktop/bioinformatics-workflows/test_data/reads_2.fq.gz
+  location: path/to/reads_2.fq.gz
   format: http://edamontology.org/format_1930
 transcriptome:
   class: File
-  location: /home/luk/Desktop/bioinformatics-workflows/test_data/transcriptome.fa
+  location: path/to/transcriptome.fa