retrain an Arabidopsis model based on vir1 mutants and VIRc

[hanyishui0612]

I want to retrain an Arabidopsis model based on vir1 mutants and VIRc complement. I have completed the nanopolish eventalign step and used xpore to obtain the differential sites of the two samples. Can you tell me what I should do next? Looking forward to your reply.

[yuukiiwa]

Hi @hanyishui0612,

You can follow the following documentation to train the model:
https://m6anet.readthedocs.io/en/latest/training.html

Thanks!

Best wishes,
Yuk Kei

[hanyishui0612]

Hi @hanyishui0612,

You can follow the following documentation to train the model: https://m6anet.readthedocs.io/en/latest/training.html

Thanks!

Best wishes, Yuk Kei

I train the demo following the instructions above(https://m6anet.readthedocs.io/en/latest/training.html) .But i failed.I'll send you the error message tomorrow.

[hanyishui0612]

Hi,thank you for your reply.Here is my training commands.
m6anet train --model_config /home/ashui/Software/m6anet-master/m6anet/model/configs/model_configs/m6anet.toml --train_config /home/ashui/Software/m6anet-master/m6anet/model/configs/training_configs/m6anet_train_config.toml --save_dir /path/to/save_dir --device cpu --lr 0.0001 --seed 25 --epochs 30 --save_per_epoch 1 --num_iterations 5

Here is my data.info.labelled:

When I ran the above command, the following error occurred：

Can you tell me how to solve it? Sincerely looking forward to your reply.