Xpore diffmod output table is empty

[nawa2179]

Hi,

I ran Xpore on my direct RNA dataset using the RNA004 9-mer model .

Here the config.yaml file :

`data:

WT:
REP1: /home/work/xpore/rep1/WT/
REP2: /home/work/xpore/rep2/WT/

KO:
REP1: /home/work/xpore/rep1/KO/
REP2: /home/work/xpore/rep2/KO/

prior: /home/work/xpore/RNA004_ont_9mer.txt

out: /home/work/xpore/out/

criteria:
readcount_min: 3
readcount_max: 1000

method:
prefiltering:
method: t-test
threshold: 1.0
max_iters: 500
stopping_criteria: 0.00001
`

The run completed successfully without any errors, but the generated diffmod.table file is empty.

Could you please advise on what might be causing this or how I could troubleshoot it?

Thanks in advance for your help!

Nawad

[yuukiiwa]

Hi @nawa2179,

Please use the 5-mer model provided in the same directory.

Thanks!

Best wishes,
Yuk Kei

[XiaoKaixuan12333]

hi ,I also meet this question , I just want to know why can not use RNA004_ont_9mer.txt ?