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BenBrockBenBrock
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Merge pull request #5 from GraphBLAS/add-tests
Add basic tests using Bash scripts
2 parents 68c0d2b + 77e77c2 commit 293228b

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‎.github/workflows/ci.yml‎

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name: "CI"
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on:
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push:
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branches:
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- main
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pull_request:
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jobs:
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checks:
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runs-on: 'ubuntu-latest'
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steps:
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- uses: actions/checkout@v3
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- uses: actions/setup-python@v4
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with:
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python-version: '3.12'
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cache: 'pip'
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- run: pip install -r requirements.txt
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- name: Checks
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uses: pre-commit/[email protected]
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gcc:
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runs-on: 'ubuntu-latest'
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strategy:
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matrix:
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cxx: [gcc, clang]
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name: ${{ matrix.cxx }}
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env:
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CXX: ${{ matrix.cxx }}
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steps:
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- uses: actions/checkout@v4
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- name: CMake
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run: |
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sudo apt-get update
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sudo apt-get install libhdf5-dev
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cmake -B build
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- name: Build
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run: make -C build -j `nproc`
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- name: Test
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run: ctest --test-dir ./build/test/bash

‎CMakeLists.txt‎

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if(CMAKE_PROJECT_NAME STREQUAL PROJECT_NAME)
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add_subdirectory(examples)
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add_subdirectory(test)
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endif()

‎test/CMakeLists.txt‎

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add_subdirectory(bash)

‎test/bash/CMakeLists.txt‎

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function(download_data url file_name)
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set(DATASET_ARCHIVE ${CMAKE_BINARY_DIR}/data/${file_name})
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file(DOWNLOAD
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${url}
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${DATASET_ARCHIVE})
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endfunction()
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download_data(https://suitesparse-collection-website.herokuapp.com/MM/DIMACS10/chesapeake.tar.gz
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chesapeake.tar.gz)
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download_data(https://suitesparse-collection-website.herokuapp.com/MM/HB/1138_bus.tar.gz
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1138_bus.tar.gz)
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download_data(https://suitesparse-collection-website.herokuapp.com/MM/Belcastro/mouse_gene.tar.gz
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mouse_gene.tar.gz)
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download_data(https://suitesparse-collection-website.herokuapp.com/MM/Pajek/IMDB.tar.gz
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IMDB.tar.gz)
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find_program(BASH_PROGRAM bash)
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enable_testing()
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if(BASH_PROGRAM)
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add_test(NAME integration.chesapeake COMMAND ${BASH_PROGRAM} ${CMAKE_CURRENT_SOURCE_DIR}/test.sh ${CMAKE_BINARY_DIR}/data/chesapeake.tar.gz)
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add_test(NAME integration.1138_bus COMMAND ${BASH_PROGRAM} ${CMAKE_CURRENT_SOURCE_DIR}/test.sh ${CMAKE_BINARY_DIR}/data/1138_bus.tar.gz)
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add_test(NAME integration.mouse_gene COMMAND ${BASH_PROGRAM} ${CMAKE_CURRENT_SOURCE_DIR}/test.sh ${CMAKE_BINARY_DIR}/data/mouse_gene.tar.gz)
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add_test(NAME integration.IMDB COMMAND ${BASH_PROGRAM} ${CMAKE_CURRENT_SOURCE_DIR}/test.sh ${CMAKE_BINARY_DIR}/data/IMDB.tar.gz)
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endif()

‎test/bash/test.sh‎

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#!/usr/bin/env bash
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set -e
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convert_ssmc() {
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echo "unpacking $1"
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fpath=$1
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format=$2
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if [ -z "$format" ]
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then
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format=COO
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else
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format=$2
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fi
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format_string=`echo ${format} | tr '[:upper:]' '[:lower:]'`
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echo "Writing in format ${format}."
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fname=`basename ${fpath}`
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directory=`dirname ${fpath}`
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tar -xf $fpath -C $directory
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matrix_name=${fname/.tar.gz/}
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main_matrix=$directory/$matrix_name/$matrix_name.mtx
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dest_file=$directory/$matrix_name.${format_string}.bsp.h5
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# echo "dest file ${dest_file}"
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# echo "Primary matrix is \"${main_matrix}\" -> ${dest_file}/root"
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echo "mtx2bsp ${main_matrix} ${dest_file} ${format}"
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mtx2bsp ${main_matrix} ${dest_file} ${format}
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# Set "null option" to return an empty list if no files match glob.
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shopt -s nullglob
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for secondary_matrix in ${directory}/${matrix_name}/${matrix_name}_*.mtx
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do
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# echo "Secondary matrix \"${secondary_matrix}\""
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secondary_name=`basename ${secondary_matrix}`
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secondary_name=${secondary_name/.mtx/}
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secondary_name=${secondary_name/${matrix_name}_/}
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echo "mtx2bsp ${secondary_matrix} ${dest_file}:${secondary_name}"
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mtx2bsp ${secondary_matrix} ${dest_file}:${secondary_name}
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done
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rm -r ${directory}/${matrix_name}
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}
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check_ssmc() {
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echo "unpacking $1"
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fpath=$1
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format=$2
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if [ -z "$format" ]
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then
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format=COO
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else
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format=$2
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fi
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format_string=`echo ${format} | tr '[:upper:]' '[:lower:]'`
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fname=`basename ${fpath}`
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directory=`dirname ${fpath}`
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tar -xf $fpath -C $directory
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matrix_name=${fname/.tar.gz/}
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main_matrix=$directory/$matrix_name/$matrix_name.mtx
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dest_file=$directory/$matrix_name.${format_string}.bsp.h5
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# echo "dest file ${dest_file}"
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# echo "Primary matrix is \"${main_matrix}\" -> ${dest_file}/root"
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echo "check_equivalence ${main_matrix} ${dest_file}"
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check_equivalence ${main_matrix} ${dest_file}
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# Set "null option" to return an empty list if no files match glob.
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shopt -s nullglob
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for secondary_matrix in ${directory}/${matrix_name}/${matrix_name}_*.mtx
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do
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# echo "Secondary matrix \"${secondary_matrix}\""
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secondary_name=`basename ${secondary_matrix}`
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secondary_name=${secondary_name/.mtx/}
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secondary_name=${secondary_name/${matrix_name}_/}
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echo "check_equivalence ${secondary_matrix} ${dest_file}:${secondary_name}"
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check_equivalence ${secondary_matrix} ${dest_file}:${secondary_name}
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done
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rm -r ${directory}/${matrix_name}
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}
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export PATH=$PATH:$PWD/../../examples
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convert_ssmc $1 COO
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check_ssmc $1 COO

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