PeakAnnoEnrichment dataset #1075
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NoemieL
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Questions / Documentation
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I'm not sure I fully understand the question. But why not just use standard GRanges operations to look at which peaks overlap? |
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Hi, I am interested to know which peaks from my dataset are also on the dataset used for the PeakAnnoEnrichment analysis. For exemple I would like to know the peaks that are found in B_bulk from Encode ATACbulk. Do you know where I could find this information? Thanks
MM_OnlyPre_peak <- addArchRAnnotations(ArchRProj = MM_OnlyPre_peak, collection = "ATAC",force=TRUE)
enrichATAC <- peakAnnoEnrichment(
seMarker = markersPeaks,
ArchRProj = MM_OnlyPre_peak,
peakAnnotation = "ATAC",
cutOff = "FDR <= 0.05 & Log2FC >= 1"
)
ATAC-Enriched-Marker-Heatmap_Translocation_Log2FC>=1_n10_rnareintegration.pdf
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