footprint depth per cell

[mitchTwoTimes]

Is there a way to get footprint depth out of the getFootprints() output? Ideally I could have colData attached to these values.

Thanks

[rcorces]

we dont provide these metrics but I believe you can calculate them from the values stored in the output of getFootprints()?

[mitchTwoTimes]

Thanks for your response. What would that look like? Is there a resource where I could learn how to do this?

[rcorces]

Sorry - this is outside the scope of the support we provide. You can read Baek et al 2017 (BaGFoot) which might provide some hints.
https://pubmed.ncbi.nlm.nih.gov/28538187/
You might also find some hints in the Sup Material from our 2018 Science paper - https://www.science.org/doi/10.1126/science.aav1898