addIterativeLSI - Definition of terms #1288
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Hello, Could you advise on the precise definition of the following
This is not clear from the function documentation here or when running For context, I'm looking to confirm the parameter I should alter for:
This is given as the first option to try when looking to attenuate strong batch effects (page 27), but, as it stands, a clear explanation for what both these parameters do is not provided. Many Thanks. |
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maxClusters
is a parameter passed toArchR::addClusters()
https://www.archrproject.com/reference/addClusters.html
n.start
is a parameter passed toSeurat::FindClusters()
https://satijalab.org/seurat/reference/findclusters