how to set different qvalue for different clusters when doing peak call #1537
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when doing peak call, it is sometimes necessary to set different qvalue for different clusters with different cell numbers, how can I set them in the function ? can anyone give hints or other suggestions ? Thanks |
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It is not possible in ArchR to set individual q value cutoffs per cluster. If you want to do something other than what ArchR offers, you can create your own peakset outside of ArchR and use |
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ok, thanks |
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It is not possible in ArchR to set individual q value cutoffs per cluster. If you want to do something other than what ArchR offers, you can create your own peakset outside of ArchR and use
addPeakSet()to import it into your project.