Generation of Summarized Experiment from ArchR Project

[sylestiel]

Hi Ryan,

What is the best way to convert the ArchR project to a Summarized Experiment and/or a Ranged Summarized Experiment?

Thanks!

[rcorces]

You cant convert and ArchRProject to a SummarizedExperiment - there is far too much information in an ArchRProject to be stored in a SummarizedExperiment. But I believe this will do what you are looking for (for a single matrix)
https://www.archrproject.com/reference/getGroupSE.html

[sylestiel]

Would you be able to advice if I could use this output to run FigR?

[rcorces]

I dont see why not but I've never used that tool