Extracting data from ArchR #1803
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rcorces
dimurali93
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At the end of my ArchR analysis is there a way to export sn-ATAC matrix, along with metadata in a cisTopic object ? |
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Answered by
rcorces
Jan 10, 2023
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No. You can of course export the matrix and metadata and form them into a cisTopic object yourself though. |
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dimurali93
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No. You can of course export the matrix and metadata and form them into a cisTopic object yourself though.
Fair warning that depending on what matrix you try to export and how many cells are in your project, this may not work due to limits on vector size in R.
https://www.archrproject.com/reference/getMatrixFromProject.html