plotTrajectory second plot colour #1844
jblich870
started this conversation in
Feature Requests
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
Uh oh!
There was an error while loading. Please reload this page.
-
Hi,
Regarding plotTrajectory, the manual states:
"The second plot that is returned by plotTrajectory() is a dot plot of pseudo-time versus the value of the relevant feature, in this case, the gene score or gene expression of CEBPB. In this case, the cells are colored by their pseudo-time."
Would it be possible to add a feature that allows cells to be coloured by any metadata variable? For example one could colour cells by
Sample
, and then specify usingpal =
which colours would be assigned to each sample.I had a go looking through the source code but was unable to figure out how to modify the function to allow this. In principle it seems like it might be a straightforward thing to add?
Would be v grateful!
Many thanks,
J
Beta Was this translation helpful? Give feedback.
All reactions