Cutoff in plotEnrichHeatmap() and plotMarkerHeatmap()

[dimurali93]

Hi All,

Can I know what is Cutoff in plotEnrichHeatmap() and how to relate it to the cutOff = "FDR <= 0.01 & Log2FC >= 0.5" in plotMarkerHeatmap()

I got a list of enriched motifs from plotEnrichHeatmap() using a cutoff value = 5 and then i obtained positively correlated TFs. I would like to plot heatmap using plotMarkerHeatmap() function for the enriched motifs and was wondering what cutoff I should use so that I am neither losing any information in the process nor using arbitrary cutoffs at each step.

Thanks,
Divya

[rcorces]

They are unrelated. The parameters are both defined in their respective function documentation
https://www.archrproject.com/reference/plotEnrichHeatmap.html