ENCODE Motif PWMs

[EraslanBas]

Hi,

I am doing the motif enrichment with the "encode" motif set defined in addMotifAnnotations() function. For human, there are 2,065 TF-motif pairs, some TFs with more than one motif. May I ask how I can get the PWM list of these 2,065 motifs? I checked "http://compbio.mit.edu/encode-motifs/" but it is inaccessible now.

Thank you.

[rcorces]

This is the relevant piece of code

ArchR/R/AnnotationPeaks.R

Lines 508 to 511 in 629cf1d

	.requirePackage("chromVARmotifs",installInfo='devtools::install_github("GreenleafLab/chromVARmotifs")')
	data("encode_pwms")
	motifs <- encode_pwms
	obj <- .summarizeChromVARMotifs(motifs)

[EraslanBas]

Thank you very much Ryan!