How to deal with dsciATAC data, it's about 50,000 cells per sample. #1937
Goood2001
started this conversation in
Feature Requests
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
-
I'm working with an object which is about 50,000 cells per sample. When I use ArchR addDoubletScores() function to inferring dsciATAC-seq Doublets, there are only a few cells can be detection as doublets and most of cells have low doubleScore. About this issue my solution is using subsetArchRProject() to split my ArrowFiles into 3 or 5 parts and calculate each DoubleScore. Then I can get normal doublets rate.

Thus, is there any max level of cell numbers per sample that ArchR can deal with? I guess it's around 10k cells?
Beta Was this translation helpful? Give feedback.
All reactions