Missing genes

[philmar1]

Hello,

I expected to find the following genes in the GeneScoreMatrix features but none of them appears:
[IGHD', 'IGHM', ‘TRDC 'TRAC', 'CTD-2509G16.5', 'TNFRST13B', 'AC004585.1', 'RP11-158I9.5', 'LINC02446', 'CTD-2509G16.3', 'RP11-731F5.2', 'IGHA2', 'RP11-785D18.3', 'TRDV1', 'AC133644.2', 'RP11-829H16.3', 'TRGJP', 'TRGV8', 'TRGC1', 'TRGC2', 'ZNF587P1', 'GS1-115G20.1', 'TRDV2', 'MIR4422HG', 'RP11-277P12.6', 'PRAMENP', 'AC002480.5', 'IGKV2-28', 'LINC01857', 'IL3RA', 'HIST1H2AC', 'RP11-160E2.19', 'TRDV3', 'RP4-809F18.1', ‘TRGV9’]

Here is the output of calling ArchrR:

ArchR : Version 1.0.2
For more information see our website : www.ArchRProject.com
If you encounter a bug please report : https://github.com/GreenleafLab/ArchR/issues
Loading Required Packages...
Loading Package : grid v4.3.1
Loading Package : gridExtra v2.3
Loading Package : gtools v3.9.4
Loading Package : gtable v0.3.4
Loading Package : ggplot2 v3.4.3
Loading Package : magrittr v2.0.3
Loading Package : plyr v1.8.8
Loading Package : stringr v1.5.0
Loading Package : data.table v1.14.8
Loading Package : matrixStats v1.0.0
Loading Package : S4Vectors v0.38.1
Loading Package : GenomicRanges v1.52.0
Loading Package : BiocGenerics v0.46.0
Loading Package : Matrix v1.6.1
Loading Package : Rcpp v1.0.11
Loading Package : SummarizedExperiment v1.30.2
Loading Package : rhdf5 v2.44.0

The genome used is BSgenome.Hsapiens.UCSC.hg38

Do you have any explanation please ?

Kind regards

Philippe