Manually calculating overlapping cell aggregates

[jayypaul]

Hi there,

is there a simple, suggested way to manually create the cell aggregates, instead of calculating them as a byproduct of running something like add addpeak2genelinks? or is that basically a requirement? I see what looks like code I can adapt in

ArchR/R/IntegrativeAnalysis.R

Line 1054 in 6feec35

addPeak2GeneLinks <- function(

but just checking before I try to arbitrage something.

I saw in a previous discussion that someone was using the guts of the addpeak2genelinks, but just wondering if this is the suggested way.

Thanks for the insight!