pull out motif coordinates

[yxiao832]

Hi ArchR team,

From the peak-motif matrix, I am able to know the whether certain motif resides in certain peak.

Is there a way to know the exact chromosome coordinates of a certain motif when it was annotated in a peak? I want to do some mutation experiments on some annotated motifs.

Thank you!
Yang

[rcorces]

Please note that Issues are only for Bug reports! This is clearly stated on the issues report screen.

I am converting your issue to a Discussion topic which is the appropriate location.

[rcorces]

ArchR does not provide this functionality. However, I'm sure you can use motifmatchR to do so given outputs from ArchR. Good luck.
https://greenleaflab.github.io/motifmatchr/index.html

[yxiao832]

I am sorry I posted it at the wrong section. Thanks for the answer!