Identifying genes regulated by a TF

[galib36]

Hello,
Is there any way to identify the genes that are regulated by a certain TF. Something similar to what correlateMatrices() does, but on all the genes?

Thank you.

[rcorces]

You would have to code that yourself. the motif annotations tell you which motifs are present in which peaks. you could cross reference this with co-accessibility or peak to gene links.