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Add parallel cdash script to daily-build workflow (#5032)
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‎.github/workflows/cmake-par-script.yml‎

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‎.github/workflows/cmake-par-source.yml‎

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name: hdf5 dev parallel from source ctest script runs
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# Triggers the workflow on a call from another workflow
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on:
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workflow_call:
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inputs:
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snap_name:
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description: 'The name in the source tarballs'
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type: string
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required: false
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default: hdfsrc
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file_base:
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description: "The common base name of the source tarballs"
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required: true
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type: string
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use_environ:
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description: 'Environment to locate files'
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type: string
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required: true
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default: snapshots
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build_mode:
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description: "release vs. debug build"
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required: true
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type: string
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permissions:
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contents: read
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jobs:
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CMake_build_parallel_src_openmpi:
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name: "Parallel OpenMPI GCC-${{ inputs.build_mode }}"
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runs-on: ubuntu-latest
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steps:
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- name: Install CMake Dependencies (OpenMPI)
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run: |
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sudo apt-get update
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sudo apt-get install ninja-build graphviz curl
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sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
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sudo apt install gcc-12 g++-12 gfortran-12
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sudo apt install libaec0 libaec-dev
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sudo apt-get install libopenmpi-dev
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Install Dependencies
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uses: ssciwr/doxygen-install@v1
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with:
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version: "1.9.7"
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- name: Set file base name (OpenMPI)
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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# Get files created by release script
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- name: Get tgz-tarball (OpenMPI)
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uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
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with:
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name: tgz-tarball
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path: ${{ github.workspace }}
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- name: List files for the space (OpenMPI)
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run: |
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ls -l ${{ github.workspace }}
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ls ${{ runner.workspace }}
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- name: Uncompress source (OpenMPI)
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run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
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- name: Copy script files for the space (OpenMPI)
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run: |
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cp ${{ github.workspace }}/${{ steps.set-file-base.outputs.SOURCE_BASE }}/config/cmake/scripts/CTestScript.cmake ${{ runner.workspace }}/hdf5
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cp ${{ github.workspace }}/${{ steps.set-file-base.outputs.SOURCE_BASE }}/config/cmake/scripts/HDF5config.cmake ${{ runner.workspace }}/hdf5
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- name: List files for the hdf5 (OpenMPI)
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run: |
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ls ${{ runner.workspace }}/hdf5
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- name: Create options file (OpenMPI)
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uses: "DamianReeves/write-file-action@master"
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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- name: Run ctest script (OpenMPI)
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run: |
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cd "${{ runner.workspace }}/hdf5"
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ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-OpenMPI-s,LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -VV -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by ctest script
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- name: Save log (OpenMPI)
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uses: actions/upload-artifact@v4
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with:
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name: openmpi-log
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path: ${{ runner.workspace }}/hdf5/hdf5.log
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if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
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CMake_build_parallel_src_mpich:
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name: "Parallel Mpich GCC-${{ inputs.build_mode }}"
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runs-on: ubuntu-latest
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steps:
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- uses: actions/[email protected]
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- name: Install Linux Dependencies (MPICH)
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run: |
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sudo apt-get update
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sudo apt-get install ninja-build doxygen graphviz
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sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
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sudo apt install gcc-12 g++-12 gfortran-12
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sudo apt install libaec0 libaec-dev
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sudo apt-get install libmpich-dev
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Install Dependencies
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uses: ssciwr/doxygen-install@v1
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with:
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version: "1.9.7"
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- name: Set file base name (MPICH)
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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# Get files created by release script
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- name: Get tgz-tarball (MPICH)
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uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
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with:
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name: tgz-tarball
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path: ${{ github.workspace }}
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- name: List files for the space (MPICH)
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run: |
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ls -l ${{ github.workspace }}
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ls ${{ runner.workspace }}
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- name: Uncompress source (MPICH)
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run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
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- name: Copy script files for the space (MPICH)
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run: |
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cp ${{ github.workspace }}/${{ steps.set-file-base.outputs.SOURCE_BASE }}/config/cmake/scripts/CTestScript.cmake ${{ runner.workspace }}/hdf5
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cp ${{ github.workspace }}/${{ steps.set-file-base.outputs.SOURCE_BASE }}/config/cmake/scripts/HDF5config.cmake ${{ runner.workspace }}/hdf5
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- name: List files for the hdf5 (MPICH)
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run: |
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ls ${{ runner.workspace }}/hdf5
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- name: Create options file (MPICH)
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uses: "DamianReeves/write-file-action@master"
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=ON")
214+
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
216+
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- name: Run ctest script (MPICH)
218+
run: |
219+
cd "${{ runner.workspace }}/hdf5"
220+
ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-MPICH-s,LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -VV -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by ctest script
225+
- name: Save log (MPICH)
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uses: actions/upload-artifact@v4
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with:
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name: mpich-log
229+
path: ${{ runner.workspace }}/hdf5/hdf5.log
230+
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`

‎.github/workflows/cmake-script.yml‎

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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
9898
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
99+
set (MODEL "GHDaily")
100+
set (GROUP "GHDaily")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
100102
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
101103
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
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185187
set (CTEST_DROP_SITE_INIT "my.cdash.org")
186188
# Change following line to submit to your CDash dashboard to a different CDash project
187189
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
190+
set (MODEL "GHDaily")
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set (GROUP "GHDaily")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
189193
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
@@ -287,6 +291,8 @@ jobs:
287291
# Change following line to submit to your CDash dashboard to a different CDash project
288292
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
289293
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
294+
set (MODEL "GHDaily")
295+
set (GROUP "GHDaily")
290296
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=ON")
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# Change following line to submit to your CDash dashboard to a different CDash project
374380
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
375381
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
382+
set (MODEL "GHDaily")
383+
set (GROUP "GHDaily")
376384
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
377385
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
378386
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=ON")
@@ -474,6 +482,8 @@ jobs:
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
475483
#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 2024,fortran=ifx")
476484
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
485+
set (MODEL "GHDaily")
486+
set (GROUP "GHDaily")
477487
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
478488
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
479489
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
@@ -570,6 +580,8 @@ jobs:
570580
# Change following line to submit to your CDash dashboard to a different CDash project
571581
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
572582
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
583+
set (MODEL "GHDaily")
584+
set (GROUP "GHDaily")
573585
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
574586
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
575587
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=ON")
@@ -665,6 +677,8 @@ jobs:
665677
set (CTEST_DROP_SITE_INIT "my.cdash.org")
666678
# Change following line to submit to your CDash dashboard to a different CDash project
667679
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
680+
set (MODEL "GHDaily")
681+
set (GROUP "GHDaily")
668682
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
669683
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
670684
#set (CMAKE_GENERATOR_TOOLSET "clang")

‎.github/workflows/cygwin-cmake.yml‎

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set (CTEST_DROP_SITE_INIT "my.cdash.org")
9090
# Change following line to submit to your CDash dashboard to a different CDash project
9191
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
92+
set (MODEL "GHDaily")
93+
set (GROUP "GHDaily")
9294
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
9395
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
9496
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_GENERATE_HEADERS=OFF")

‎.github/workflows/daily-build.yml‎

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use_environ: snapshots
7777
if: ${{ ((needs.call-workflow-tarball.outputs.has_changes == 'true') || (needs.get-old-names.outputs.run-ignore == 'ignore')) }}
7878

79+
call-workflow-par-script:
80+
needs: [get-old-names, call-workflow-tarball]
81+
uses: ./.github/workflows/cmake-par-script.yml
82+
with:
83+
file_base: ${{ needs.call-workflow-tarball.outputs.file_base }}
84+
use_environ: snapshots
85+
build_mode: "Release"
86+
if: ${{ ((needs.call-workflow-tarball.outputs.has_changes == 'true') || (needs.get-old-names.outputs.run-ignore == 'ignore')) }}
87+
88+
call-workflow-par-source:
89+
needs: [get-old-names, call-workflow-tarball]
90+
uses: ./.github/workflows/cmake-par-source.yml
91+
with:
92+
file_base: ${{ needs.call-workflow-tarball.outputs.file_base }}
93+
use_environ: snapshots
94+
build_mode: "Release"
95+
if: ${{ ((needs.call-workflow-tarball.outputs.has_changes == 'true') || (needs.get-old-names.outputs.run-ignore == 'ignore')) }}
96+
7997
call-workflow-sanitizers:
8098
needs: [get-old-names, call-workflow-tarball]
8199
uses: ./.github/workflows/cmake-analysis.yml

‎src/H5api_adpt.h‎

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6666
#define H5TEST_DLLVAR extern
6767
#endif /* H5TEST_DLL */
6868

69+
#if defined(hdf5_testpar_shared_EXPORTS)
70+
#if defined(_MSC_VER) /* MSVC Compiler Case */
71+
#define H5TESTPAR_DLL __declspec(dllexport)
72+
#define H5TESTPAR_DLLVAR extern __declspec(dllexport)
73+
#elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
74+
#define H5TESTPAR_DLL __attribute__((visibility("default")))
75+
#define H5TESTPAR_DLLVAR extern __attribute__((visibility("default")))
76+
#endif
77+
#else
78+
#if defined(_MSC_VER) /* MSVC Compiler Case */
79+
#define H5TESTPAR_DLL __declspec(dllimport)
80+
#define H5TESTPAR_DLLVAR __declspec(dllimport)
81+
#elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
82+
#define H5TESTPAR_DLL __attribute__((visibility("default")))
83+
#define H5TESTPAR_DLLVAR extern __attribute__((visibility("default")))
84+
#endif
85+
#endif
86+
87+
#ifndef H5TESTPAR_DLL
88+
#define H5TESTPAR_DLL
89+
#define H5TESTPAR_DLLVAR extern
90+
#endif /* H5TESTPAR_DLL */
91+
6992
#if defined(hdf5_tools_shared_EXPORTS)
7093
#if defined(_MSC_VER) /* MSVC Compiler Case */
7194
#define H5TOOLS_DLL __declspec(dllexport)
@@ -232,6 +255,8 @@
232255
#define H5_DLLVAR extern
233256
#define H5TEST_DLL
234257
#define H5TEST_DLLVAR extern
258+
#define H5TESTPAR_DLL
259+
#define H5TESTPAR_DLLVAR extern
235260
#define H5TOOLS_DLL
236261
#define H5TOOLS_DLLVAR extern
237262
#define H5_DLLCPP

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