AutoTSAD/slurm-run-select.sh at main · HPI-Information-Systems/AutoTSAD · GitHub

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#!/bin/zsh
#SBATCH --job-name="SELECT"
#SBATCH --cpus-per-task 2
#SBATCH --mem=20G
#SBATCH -t 12:00:00
#SBATCH -A naumann
#SBATCH -p magic
#SBATCH --constraint=ARCH:X86

#source ~/.zshrc
set -o pipefail  # trace exit code of failed piped commands

trim() {
    local var="$*"
    # remove leading whitespace characters
    var="${var#"${var%%[![:space:]]*}"}"
    # remove trailing whitespace characters
    var="${var%"${var##*[![:space:]]}"}"
    printf '%s' "$var"
}

echo "Processing Job ${SLURM_JOB_NAME}"

logfile="results-select/${SLURM_JOBID}-screen.log"
mkdir -p "results-select"
/hpi/fs00/home/sebastian.schmidl/opt/miniconda3/envs/autotsad/bin/python -m autotsad baselines select --results-path "results-select" "$@" 2>&1 | tee -a "${logfile}"

# copy logfile to results-folder
result_path=$(head -n 20 "${logfile}" | grep -e "RESULT directory" | cut -d '=' -f 2)
result_path=$(trim "${result_path}")
cp "${logfile}" "${result_path}/screen.log"
echo "$(hostname)" > "${result_path}/hostname.txt"