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jjokellajjokella
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remove user-specific changes from runscript_mkmapdata
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‎mkmapdata/runscript_mkmapdata.sh‎

Lines changed: 54 additions & 48 deletions
Original file line numberDiff line numberDiff line change
@@ -1,12 +1,13 @@
11
#!/bin/bash -x
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#SBATCH --account=jibg36
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#SBATCH --account=slts
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#SBATCH --nodes=1
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#SBATCH --ntasks=48
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#SBATCH --ntasks-per-node=48
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#SBATCH --output=mpi-out.%j
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#SBATCH --error=mpi-err.%j
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#SBATCH --time=00:15:00
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#SBATCH --time=00:30:00
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#SBATCH --partition=mem192
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#SBATCH --constraint=largedata
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# load enviroment
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@@ -18,74 +19,79 @@ module load netCDF-Fortran
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export ESMFBIN_PATH="${EBROOTESMF}/bin/"
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### adjust your gridfile here
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export GRIDNAME="EUR-11"
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export GRIDNAME="EUR-R13B05"
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export CDATE="`date +%y%m%d`"
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export GRIDFILE="../mkmapgrids/EUR-11_191808_grid_SCRIP.nc"
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export GRIDFILE="../mkmapgrids/EUR-R13B05_199920_grid_SCRIP.nc"
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###
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### Path to the raw files downloaded from the clm website
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# rawpath="/p/largedata2/detectdata/CentralDB/projects/z04/lnd/clm2/mappingdata/grids"
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rawpath="/p/project1/cjibg36/jibg3674/eCLM_static-file-generator/mkmapdata/download_grids"
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rawpath="/p/largedata2/detectdata/CentralDB/projects/z04/lnd/clm2/mappingdata/grids"
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###
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OUTPUT="$PWD"
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### for all input files create mapping files
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for file in "$rawpath"/UGRID*.nc
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for file in SCRIPgrid_0.5x0.5_AVHRR_c110228.nc SCRIPgrid_0.25x0.25_MODIS_c170321.nc SCRIPgrid_3minx3min_LandScan2004_c120517.nc SCRIPgrid_3minx3min_MODISv2_c190503.nc SCRIPgrid_3minx3min_MODISwcspsea_c151020.nc SCRIPgrid_3x3_USGS_c120912.nc SCRIPgrid_5x5min_nomask_c110530.nc SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc SCRIPgrid_5x5min_ORNL-Soil_c170630.nc SCRIPgrid_10x10min_nomask_c110228.nc SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc SCRIPgrid_0.9x1.25_GRDC_c130307.nc SCRIPgrid_360x720_cruncep_c120830.nc UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc
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do
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basename=$(basename "$file")
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OUTFILE=map_${basename}_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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OUTFILE=map_${file}_to_${GRIDNAME}_nomask_aave_da_c$CDATE.nc
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if [[ "$basename" == UGRID* ]]; then
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SRCTYPE="--src_type UGRID"
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else
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SRCTYPE=""
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fi
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4538
case "$GRIDNAME" in
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*"EUR-R13B"*)
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echo "Creating non-conservative remapping files for your icosahedral grid ${GRIDNAME}..."
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srun $ESMFBIN_PATH/ESMF_RegridWeightGen --ignore_unmapped -s ${file} -d $(realpath $GRIDFILE) -m bilinear --src_loc center --dst_loc center -w ${OUTPUT}/${OUTFILE} --dst_regional --netcdf4
41+
srun $ESMFBIN_PATH/ESMF_RegridWeightGen --ignore_unmapped -s ${rawpath}/${file} -d $(realpath $GRIDFILE) -m bilinear --src_loc center --dst_loc center -w ${OUTPUT}/${OUTFILE} --dst_regional --netcdf4
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;;
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*)
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echo "Creating conservative remapping files for your grid ${GRIDNAME}..."
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srun $ESMFBIN_PATH/ESMF_RegridWeightGen --ignore_unmapped -s ${file} -d $(realpath $GRIDFILE) -m conserve $SRCTYPE -w ${OUTPUT}/${OUTFILE} --dst_regional --netcdf4
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# Conservative remapping: Specify UGRID source type
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#
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# In general automatic detection should work:
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# https://earthsystemmodeling.org/docs/release/latest/ESMF_refdoc/node3.html#SECTION03020000000000000000
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#
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# This overrides the automatic detection.
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if [[ "$basename" == UGRID* ]]; then
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SRCTYPE="--src_type UGRID"
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else
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SRCTYPE=""
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fi
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srun $ESMFBIN_PATH/ESMF_RegridWeightGen --ignore_unmapped -s ${rawpath}/${file} -d $(realpath $GRIDFILE) -m conserve $SRCTYPE -w ${OUTPUT}/${OUTFILE} --dst_regional --netcdf4
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;;
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esac
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done
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### rename output
58-
# mv map_SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_GLOBE-Gardner_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_3minx3min_LandScan2004_c120517.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_LandScan2004_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_3minx3min_MODISv2_c190503.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_MODISv2_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
63-
#
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# mv map_SCRIPgrid_3minx3min_MODISwcspsea_c151020.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_MODIS-wCsp_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_3x3_USGS_c120912.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_USGS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_GLOBE-Gardner-mergeGIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_0.5x0.5_AVHRR_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.5x0.5_AVHRR_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_0.25x0.25_MODIS_c170321.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.25x0.25_MODIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_5x5min_nomask_c110530.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_nomask_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_IGBP-GSDP_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_ISRIC-WISE_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
79-
#
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# mv map_SCRIPgrid_5x5min_ORNL-Soil_c170630.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_ORNL-Soil_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_10x10min_nomask_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_10x10min_nomask_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_10x10min_IGBPmergeICESatGIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_0.9x1.25_GRDC_c130307.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.9x1.25_GRDC_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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#
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# mv map_SCRIPgrid_360x720_cruncep_c120830.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_360x720_cruncep_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
64+
mv map_SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_GLOBE-Gardner_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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66+
mv map_SCRIPgrid_3minx3min_LandScan2004_c120517.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_LandScan2004_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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68+
mv map_SCRIPgrid_3minx3min_MODISv2_c190503.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_MODISv2_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
69+
70+
mv map_SCRIPgrid_3minx3min_MODISwcspsea_c151020.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_MODIS-wCsp_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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72+
mv map_SCRIPgrid_3x3_USGS_c120912.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_USGS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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mv map_SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_3x3min_GLOBE-Gardner-mergeGIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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mv map_SCRIPgrid_0.5x0.5_AVHRR_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.5x0.5_AVHRR_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
77+
78+
mv map_SCRIPgrid_0.25x0.25_MODIS_c170321.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.25x0.25_MODIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
79+
80+
mv map_SCRIPgrid_5x5min_nomask_c110530.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_nomask_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
81+
82+
mv map_SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_IGBP-GSDP_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
83+
84+
mv map_SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_ISRIC-WISE_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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86+
mv map_SCRIPgrid_5x5min_ORNL-Soil_c170630.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_5x5min_ORNL-Soil_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
87+
88+
mv map_SCRIPgrid_10x10min_nomask_c110228.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_10x10min_nomask_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
89+
90+
mv map_SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_10x10min_IGBPmergeICESatGIS_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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92+
mv map_SCRIPgrid_0.9x1.25_GRDC_c130307.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_0.9x1.25_GRDC_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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mv map_SCRIPgrid_360x720_cruncep_c120830.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_360x720_cruncep_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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mv map_UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc map_1km-merge-10min_HYDRO1K-merge-nomask_to_${GRIDNAME}_nomask_aave_da_c${CDATE}.nc
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