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Fix Black Formating Warning
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+17
-7
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+17
-7
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clarite/modules/analyze/regression/interaction_regression.py

Lines changed: 17 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -233,11 +233,19 @@ def _run_interaction_regression(
233233
# in the result based on the specific requirements of the analysis
234234
if lrdf == 0 and lrstat == 0:
235235
# Both models are equal
236-
yield {"Converged": True, "LRT_pvalue": lr_pvalue, "Log": "Both models are equivalent in terms of fit"}
236+
yield {
237+
"Converged": True,
238+
"LRT_pvalue": lr_pvalue,
239+
"Log": "Both models are equivalent in terms of fit",
240+
}
237241
elif np.isnan(lr_pvalue):
238242
# There is an issue with the LRT calculation
239243
# TODO: Extend the logs returns
240-
yield {"Converged": True, "LRT_pvalue": lr_pvalue, "Log": "Both models are equivalent in terms of fit"}
244+
yield {
245+
"Converged": True,
246+
"LRT_pvalue": lr_pvalue,
247+
"Log": "Both models are equivalent in terms of fit",
248+
}
241249
else:
242250
if report_betas:
243251
# Get beta, SE, and pvalue from interaction terms
@@ -280,7 +288,7 @@ def _run_interaction_regression(
280288
"Full_Var2_SE": est.bse[term_2],
281289
"Full_Var2_Pval": est.pvalues[term_2],
282290
"LRT_pvalue": lr_pvalue,
283-
"Log": ""
291+
"Log": "",
284292
}
285293
else:
286294
# Only return the LRT result
@@ -289,7 +297,11 @@ def _run_interaction_regression(
289297
else:
290298
# Did not converge - nothing to update
291299
# yield dict()
292-
yield {"Converged": False, "LRT_pvalue": "NaN", "Log": "One or Both models NOT Converge"}
300+
yield {
301+
"Converged": False,
302+
"LRT_pvalue": "NaN",
303+
"Log": "One or Both models NOT Converge",
304+
}
293305

294306
def _get_interaction_specific_data(self, interaction: Tuple[str, str]):
295307
"""Select the data relevant to performing a regression on a given interaction, encoding genotypes if needed"""
@@ -412,9 +424,7 @@ def _run_interaction(
412424
complete_case_mask = ~data.isna().any(axis=1)
413425
N = complete_case_mask.sum()
414426
if N == 0:
415-
raise ValueError(
416-
f"No Overlap (min_n filter: {N} < {min_n})"
417-
)
427+
raise ValueError(f"No Overlap (min_n filter: {N} < {min_n})")
418428
if N < min_n:
419429
raise ValueError(
420430
f"too few complete observations (min_n filter: {N} < {min_n})"

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